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P. troglodytes Gene: SF3B6 - ENSPTRG00000011709 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000011709
NameSF3B6
Descriptionsplicing factor 3b subunit 6 [Source:HGNC Symbol;Acc:HGNC:30096]
OrganismPan troglodytes (chimpanzee)
Synonym(s)cgi-110, ht006, p14, sap14a, sf3b14a
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000057fibroblast
  • UBERON:0000104life cycle
432
  • 432
98.26
  • 98.26
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
574
  • 574
  • 1.03e3
  • 1.13e3
  • 1.14e3
97.69
  • 97.69
  • 95.87
  • 95.44
  • 95.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
731
  • 731
  • 1.27e3
  • 1.55e3
  • 1.62e3
97.06
  • 97.06
  • 94.88
  • 93.76
  • 93.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
769
  • 769
  • 2.92e3
96.91
  • 96.91
  • 88.24
AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
883
  • 883
96.45
  • 96.45
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.10e3
  • 1.10e3
  • 1.85e3
  • 1.92e3
  • 1.96e3
  • 1.99e3
  • 2.27e3
95.58
  • 95.58
  • 92.55
  • 92.27
  • 92.12
  • 91.99
  • 90.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.18e3
  • 1.18e3
95.24
  • 95.24
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
1.22e3
  • 1.22e3
95.11
  • 95.11
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.22e3
  • 1.22e3
  • 1.29e3
  • 1.92e3
  • 1.94e3
  • 1.98e3
95.09
  • 95.09
  • 94.79
  • 92.29
  • 92.21
  • 92.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.26e3
  • 1.26e3
  • 1.82e3
94.94
  • 94.94
  • 92.69
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
1.31e3
  • 1.31e3
94.73
  • 94.73
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.33e3
  • 1.33e3
94.63
  • 94.63
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
1.44e3
  • 1.44e3
94.22
  • 94.22
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.50e3
  • 1.50e3
  • 1.53e3
  • 2.64e3
93.96
  • 93.96
  • 93.85
  • 89.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.53e3
  • 1.53e3
93.85
  • 93.85
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.75e3
  • 1.75e3
92.98
  • 92.98
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
1.80e3
  • 1.80e3
92.76
  • 92.76
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
2.10e3
  • 2.10e3
91.54
  • 91.54
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
2.16e3
  • 2.16e3
  • 2.60e3
  • 3.29e3
91.30
  • 91.30
  • 89.54
  • 86.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
2.19e3
  • 2.19e3
91.17
  • 91.17
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
2.51e3
  • 2.51e3
89.91
  • 89.91
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
3.01e3
  • 3.01e3
87.91
  • 87.91
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
3.70e3
  • 3.70e3
85.12
  • 85.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000011709.

Cross-references

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