P. troglodytes Gene: VAX2 - ENSPTRG00000012037 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000012037
NameVAX2
Descriptionventral anterior homeobox 2 [Source:HGNC Symbol;Acc:HGNC:12661]
OrganismPan troglodytes (chimpanzee)
Synonym(s)dres93
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
7.77e3
  • 7.77e3
  • 7.88e3
  • 1.31e4
68.72
  • 68.72
  • 68.30
  • 47.19
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
8.46e3
  • 8.46e3
  • 1.13e4
  • 1.21e4
  • 1.29e4
  • 1.36e4
65.97
  • 65.97
  • 54.47
  • 51.17
  • 48.15
  • 45.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
8.48e3
  • 8.48e3
  • 9.15e3
  • 1.27e4
65.86
  • 65.86
  • 63.16
  • 49.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
8.64e3
  • 8.64e3
  • 1.20e4
  • 1.30e4
  • 1.33e4
  • 1.44e4
  • 1.62e4
65.22
  • 65.22
  • 51.58
  • 47.50
  • 46.41
  • 41.99
  • 34.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
9.83e3
  • 9.83e3
60.45
  • 60.45
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
  • 1.19e4
  • 1.28e4
  • 1.42e4
59.07
  • 59.07
  • 51.92
  • 48.44
  • 42.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.03e4
  • 1.03e4
58.65
  • 58.65
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
  • 2.12e4
52.10
  • 52.10
  • 14.65
AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
1.22e4
  • 1.22e4
50.81
  • 50.81
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
1.26e4
  • 1.26e4
49.19
  • 49.19
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
  • 1.76e4
46.19
  • 46.19
  • 29.07
AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
1.34e4
  • 1.34e4
45.96
  • 45.96
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.36e4
  • 1.36e4
  • 1.77e4
45.34
  • 45.34
  • 28.75
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
1.41e4
  • 1.41e4
43.15
  • 43.15
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
42.68
  • 42.68
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
1.46e4
  • 1.46e4
41.33
  • 41.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Euteleostomi14 species14 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000012037.

Cross-references

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