P. troglodytes Gene: VSX1 - ENSPTRG00000013337 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000013337
NameVSX1
Descriptionvisual system homeobox 1 [Source:HGNC Symbol;Acc:HGNC:12723]
OrganismPan troglodytes (chimpanzee)
Synonym(s)ppcd, ppcd1, ppd
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
  • 1.89e4
  • 1.94e4
  • 2.16e4
43.30
  • 43.30
  • 23.88
  • 21.72
  • 13.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
  • 1.58e4
  • 1.65e4
42.47
  • 42.47
  • 36.29
  • 33.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
1.47e4
  • 1.47e4
40.76
  • 40.76
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.97e4
  • 1.97e4
  • 2.04e4
20.65
  • 20.65
  • 17.88
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000013337.

Cross-references

EnsemblENSPTRG00000013337 (VSX1)
HGNCHGNC:12723 (VSX1)
EMBLAACZ03124595
Uniprot/SPTREMBLH2QK42, H2QK42_PANTR

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