P. troglodytes Gene: COL18A1 - ENSPTRG00000014005 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000014005
NameCOL18A1
Descriptioncollagen, type XVIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2195]
OrganismPan troglodytes (chimpanzee)
Synonym(s)kno, kno1, ks

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
372
  • 372
  • 939
98.25214
  • 98.25214
  • 95.58089
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.14e3
  • 1.14e3
  • 1.43e3
94.65750
  • 94.65750
  • 93.24885
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.32e3
  • 1.32e3
  • 1.53e3
93.78121
  • 93.78121
  • 92.80599
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
4.13e3
  • 4.13e3
  • 6.52e3
80.53331
  • 80.53331
  • 69.28295
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0034919juvenile stage
9.10e3
  • 9.10e3
  • 9.41e3
  • 1.19e4
57.11038
  • 57.11038
  • 55.65618
  • 44.08273
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.18e4
  • 1.18e4
44.23349
  • 44.23349
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLAL954258
EnsemblENSPTRG00000014005 (COL18A1)
HGNCHGNC:2195 (COL18A1)
Uniprot/SPTREMBLH2RAH2, H2RAH2_PANTR

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