P. troglodytes Gene: COL18A1 - ENSPTRG00000014005 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000014005
NameCOL18A1
Descriptioncollagen, type XVIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2195]
OrganismPan troglodytes (chimpanzee)
Synonym(s)kno, kno1, ks
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002129cerebellar cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
496
  • 496
  • 763
  • 4.09e3
98.01
  • 98.01
  • 96.93
  • 83.54
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
529
  • 529
  • 609
  • 939
  • 1.54e3
97.88
  • 97.88
  • 97.55
  • 96.22
  • 93.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
902
  • 902
  • 1.43e3
  • 3.43e3
96.37
  • 96.37
  • 94.23
  • 86.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.32e3
  • 1.32e3
  • 1.81e3
94.69
  • 94.69
  • 92.73
AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
1.38e3
  • 1.38e3
94.43
  • 94.43
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.79e3
  • 1.79e3
  • 5.66e3
  • 7.25e3
  • 7.49e3
  • 1.02e4
92.79
  • 92.79
  • 77.23
  • 70.80
  • 69.84
  • 58.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
2.95e3
  • 2.95e3
88.14
  • 88.14
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
3.03e3
  • 3.03e3
87.82
  • 87.82
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
4.13e3
  • 4.13e3
  • 4.27e3
  • 5.87e3
  • 6.86e3
83.37
  • 83.37
  • 82.80
  • 76.37
  • 72.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
5.40e3
  • 5.40e3
  • 6.08e3
  • 6.25e3
  • 8.94e3
  • 1.00e4
  • 1.04e4
78.27
  • 78.27
  • 75.51
  • 74.84
  • 64.00
  • 59.69
  • 58.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
6.65e3
  • 6.65e3
73.23
  • 73.23
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
7.10e3
  • 7.10e3
71.44
  • 71.44
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
7.21e3
  • 7.21e3
70.96
  • 70.96
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
8.39e3
  • 8.39e3
66.22
  • 66.22
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
8.52e3
  • 8.52e3
  • 1.18e4
65.70
  • 65.70
  • 52.35
AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
9.43e3
  • 9.43e3
62.03
  • 62.03
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
9.84e3
  • 9.84e3
60.40
  • 60.40
AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
1.02e4
  • 1.02e4
59.10
  • 59.10
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
59.03
  • 59.03
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
1.13e4
  • 1.13e4
54.61
  • 54.61
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
1.14e4
  • 1.14e4
54.03
  • 54.03
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
1.38e4
  • 1.38e4
44.61
  • 44.61
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
1.52e4
  • 1.52e4
38.83
  • 38.83
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Amniota12 species12 genesCompare expression
Tetrapoda13 species13 genesCompare expression
Euteleostomi14 species14 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000014005.

Cross-references

EnsemblENSPTRG00000014005 (COL18A1)
HGNCHGNC:2195 (COL18A1)
EMBLAL954258
Uniprot/SPTREMBLH2RAH2, H2RAH2_PANTR

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