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P. troglodytes Gene: SEC22C - ENSPTRG00000014795 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000014795
NameSEC22C
DescriptionSEC22 homolog C, vesicle trafficking protein [Source:HGNC Symbol;Acc:HGNC:16828]
OrganismPan troglodytes (chimpanzee)
Synonym(s)mgc13261, mgc5373, sec22l3
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
3.17e3
  • 3.17e3
  • 3.80e3
  • 6.12e3
87.26
  • 87.26
  • 84.71
  • 75.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
3.54e3
  • 3.54e3
  • 3.75e3
  • 4.71e3
  • 4.72e3
  • 6.03e3
  • 7.15e3
85.76
  • 85.76
  • 84.91
  • 81.05
  • 80.99
  • 75.74
  • 71.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
3.92e3
  • 3.92e3
84.22
  • 84.22
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
4.18e3
  • 4.18e3
  • 4.67e3
  • 4.85e3
83.19
  • 83.19
  • 81.22
  • 80.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
4.21e3
  • 4.21e3
  • 6.34e3
83.08
  • 83.08
  • 74.47
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
4.22e3
  • 4.22e3
  • 4.66e3
  • 6.60e3
  • 7.79e3
83.04
  • 83.04
  • 81.26
  • 73.44
  • 68.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
4.45e3
  • 4.45e3
82.11
  • 82.11
AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
4.55e3
  • 4.55e3
81.67
  • 81.67
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
4.64e3
  • 4.64e3
  • 6.87e3
  • 8.35e3
  • 9.32e3
81.34
  • 81.34
  • 72.36
  • 66.37
  • 62.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
4.91e3
  • 4.91e3
  • 5.22e3
80.26
  • 80.26
  • 78.98
AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
4.91e3
  • 4.91e3
  • 4.97e3
  • 5.14e3
  • 6.19e3
  • 6.94e3
80.23
  • 80.23
  • 80.00
  • 79.31
  • 75.08
  • 72.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
4.98e3
  • 4.98e3
79.96
  • 79.96
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
5.24e3
  • 5.24e3
  • 6.10e3
78.91
  • 78.91
  • 75.43
AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
5.40e3
  • 5.40e3
78.27
  • 78.27
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
5.61e3
  • 5.61e3
77.40
  • 77.40
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
6.05e3
  • 6.05e3
75.64
  • 75.64
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
6.15e3
  • 6.15e3
75.27
  • 75.27
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
6.44e3
  • 6.44e3
74.07
  • 74.07
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
6.58e3
  • 6.58e3
73.53
  • 73.53
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
6.99e3
  • 6.99e3
71.87
  • 71.87
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
7.27e3
  • 7.27e3
70.73
  • 70.73
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
8.25e3
  • 8.25e3
66.79
  • 66.79
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
8.48e3
  • 8.48e3
65.88
  • 65.88
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
8.63e3
  • 8.63e3
65.28
  • 65.28
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000014795.

Cross-references

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