P. troglodytes Gene: SH3TC1 - ENSPTRG00000015901 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000015901
NameSH3TC1
DescriptionSH3 domain and tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:26009]
OrganismPan troglodytes (chimpanzee)
Synonym(s)flj20356
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
1.33e3
  • 1.33e3
94.66
  • 94.66
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
4.15e3
  • 4.15e3
  • 4.17e3
83.29
  • 83.29
  • 83.23
AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
4.22e3
  • 4.22e3
83.02
  • 83.02
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
5.13e3
  • 5.13e3
  • 5.70e3
  • 6.26e3
  • 9.77e3
79.34
  • 79.34
  • 77.04
  • 74.82
  • 60.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
6.15e3
  • 6.15e3
75.25
  • 75.25
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
7.39e3
  • 7.39e3
70.27
  • 70.27
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
  • 1.20e4
  • 1.20e4
  • 1.31e4
56.61
  • 56.61
  • 51.72
  • 51.65
  • 47.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.10e4
  • 1.10e4
  • 1.11e4
  • 1.16e4
  • 1.24e4
  • 1.25e4
55.78
  • 55.78
  • 55.12
  • 53.17
  • 50.20
  • 49.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.19e4
  • 1.19e4
52.23
  • 52.23
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
49.82
  • 49.82
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.25e4
  • 1.25e4
49.78
  • 49.78
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
49.67
  • 49.67
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
  • 1.26e4
  • 1.28e4
  • 1.31e4
  • 1.32e4
  • 1.47e4
49.65
  • 49.65
  • 49.38
  • 48.58
  • 47.26
  • 46.79
  • 40.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
46.55
  • 46.55
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.37e4
  • 1.37e4
  • 1.48e4
  • 1.54e4
45.02
  • 45.02
  • 40.24
  • 38.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.37e4
  • 1.37e4
  • 1.39e4
  • 1.44e4
44.80
  • 44.80
  • 43.91
  • 41.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
1.37e4
  • 1.37e4
44.72
  • 44.72
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
1.60e4
  • 1.60e4
35.48
  • 35.48
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Theria11 species11 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000015901.

Cross-references

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