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P. troglodytes Gene: AFP - ENSPTRG00000016151 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000016151
NameAFP
Descriptionalpha-fetoprotein [Source:HGNC Symbol;Acc:HGNC:317]
OrganismPan troglodytes (chimpanzee)
Synonym(s)feta, hpafp
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.00e4
  • 1.00e4
59.57
  • 59.57
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.14e4
  • 1.14e4
  • 1.26e4
  • 1.49e4
54.20
  • 54.20
  • 49.34
  • 39.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
1.20e4
  • 1.20e4
51.72
  • 51.72
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.32e4
  • 1.32e4
  • 1.68e4
46.92
  • 46.92
  • 32.47
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.48e4
  • 1.48e4
  • 1.54e4
  • 1.76e4
  • 1.78e4
  • 1.85e4
  • 1.86e4
40.24
  • 40.24
  • 38.04
  • 28.99
  • 28.44
  • 25.55
  • 25.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.51e4
  • 1.51e4
  • 1.56e4
  • 1.63e4
  • 1.87e4
39.26
  • 39.26
  • 37.25
  • 34.44
  • 24.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
1.53e4
  • 1.53e4
38.32
  • 38.32
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
1.63e4
  • 1.63e4
34.36
  • 34.36
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.63e4
  • 1.63e4
  • 2.15e4
34.25
  • 34.25
  • 13.41
AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
1.74e4
  • 1.74e4
29.80
  • 29.80
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.85e4
  • 1.85e4
25.59
  • 25.59
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species17 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000016151.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Sarcopterygii1 geneCompare expression

Paralogy information comes from OMA : ENSPTRG00000016151.

Cross-references

EnsemblENSPTRG00000016151 (AFP)
HGNCHGNC:317 (AFP)
EMBLAACZ03033186
Uniprot/SPTREMBLH2QPM9, H2QPM9_PANTR

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