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P. troglodytes Gene: SLC10A6 - ENSPTRG00000016253 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000016253
NameSLC10A6
Descriptionsolute carrier family 10 (sodium/bile acid cotransporter), member 6 [Source:HGNC Symbol;Acc:HGNC:30603]
OrganismPan troglodytes (chimpanzee)
Synonym(s)soat
Orthologs(s)15 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.09e4
  • 1.09e4
  • 1.11e4
56.19
  • 56.19
  • 55.28
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
  • 1.30e4
  • 1.54e4
  • 1.72e4
48.99
  • 48.99
  • 47.65
  • 38.03
  • 30.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
43.39
  • 43.39
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
1.46e4
  • 1.46e4
41.40
  • 41.40
AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • UBERON:0000104life cycle
1.49e4
  • 1.49e4
39.86
  • 39.86
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.51e4
  • 1.51e4
  • 1.73e4
  • 1.78e4
  • 1.94e4
39.09
  • 39.09
  • 30.16
  • 28.16
  • 22.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
1.54e4
  • 1.54e4
37.97
  • 37.97
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.56e4
  • 1.56e4
37.35
  • 37.35
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018685nursing stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.58e4
  • 1.58e4
  • 1.60e4
  • 1.73e4
  • 1.73e4
  • 1.84e4
36.59
  • 36.59
  • 35.62
  • 30.55
  • 30.47
  • 25.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
1.58e4
  • 1.58e4
36.24
  • 36.24
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.66e4
  • 1.66e4
  • 2.01e4
33.12
  • 33.12
  • 19.02
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.68e4
  • 1.68e4
32.40
  • 32.40
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.86e4
  • 1.86e4
25.25
  • 25.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000016253.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota2 genesCompare expression

Paralogy information comes from OMA : ENSPTRG00000016253.

Cross-references

EnsemblENSPTRG00000016253 (SLC10A6)
HGNCHGNC:30603 (SLC10A6)
EMBLAACZ03029864, AACZ03029865
Uniprot/SPTREMBLH2QPU4, H2QPU4_PANTR

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