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P. troglodytes Gene: SYNPO2 - ENSPTRG00000016394 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000016394
NameSYNPO2
Descriptionsynaptopodin 2 [Source:HGNC Symbol;Acc:HGNC:17732]
OrganismPan troglodytes (chimpanzee)
Synonym(s)myopodin
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001155colon
  • UBERON:0018241prime adult stage
106
  • 106
99.58
  • 99.58
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
189
  • 189
99.24
  • 99.24
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
352
  • 352
98.59
  • 98.59
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
2.27e3
  • 2.27e3
  • 2.71e3
  • 3.38e3
  • 4.60e3
90.85
  • 90.85
  • 89.10
  • 86.39
  • 81.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
4.50e3
  • 4.50e3
81.90
  • 81.90
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
5.96e3
  • 5.96e3
76.02
  • 76.02
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
6.11e3
  • 6.11e3
75.42
  • 75.42
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
7.32e3
  • 7.32e3
70.53
  • 70.53
AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
8.31e3
  • 8.31e3
66.56
  • 66.56
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
8.55e3
  • 8.55e3
  • 9.51e3
  • 1.03e4
  • 1.19e4
65.60
  • 65.60
  • 61.72
  • 58.48
  • 52.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
8.95e3
  • 8.95e3
63.99
  • 63.99
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
9.16e3
  • 9.16e3
63.14
  • 63.14
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
9.66e3
  • 9.66e3
61.10
  • 61.10
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
9.68e3
  • 9.68e3
  • 1.21e4
61.04
  • 61.04
  • 51.14
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
  • 1.23e4
57.58
  • 57.58
  • 50.54
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000112sexually immature stage
1.09e4
  • 1.09e4
  • 1.18e4
  • 1.35e4
  • 1.42e4
  • 1.48e4
  • 1.64e4
56.09
  • 56.09
  • 52.54
  • 45.65
  • 43.01
  • 40.39
  • 33.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
  • 1.16e4
  • 1.19e4
  • 1.41e4
  • 1.47e4
54.17
  • 54.17
  • 53.12
  • 52.09
  • 43.10
  • 40.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
1.14e4
  • 1.14e4
54.08
  • 54.08
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
52.09
  • 52.09
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.21e4
  • 1.21e4
  • 1.27e4
51.42
  • 51.42
  • 48.86
AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.25e4
  • 1.25e4
49.84
  • 49.84
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.26e4
  • 1.26e4
49.08
  • 49.08
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.38e4
  • 1.38e4
  • 1.42e4
  • 1.68e4
44.59
  • 44.59
  • 43.04
  • 32.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
1.50e4
  • 1.50e4
39.55
  • 39.55
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000016394.

Cross-references

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