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P. troglodytes Gene: CDH6 - ENSPTRG00000016761 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000016761
NameCDH6
Descriptioncadherin 6, type 2, K-cadherin (fetal kidney) [Source:HGNC Symbol;Acc:HGNC:1765]
OrganismPan troglodytes (chimpanzee)
Orthologs(s)17 orthologs
Paralog(s)10 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
4.30e3
  • 4.30e3
  • 5.30e3
82.71
  • 82.71
  • 78.68
AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
5.41e3
  • 5.41e3
78.23
  • 78.23
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
7.09e3
  • 7.09e3
  • 8.21e3
  • 9.88e3
  • 1.03e4
  • 1.05e4
  • 1.34e4
71.48
  • 71.48
  • 66.96
  • 60.23
  • 58.64
  • 57.93
  • 45.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0034919juvenile stage
8.33e3
  • 8.33e3
  • 1.01e4
  • 1.12e4
  • 1.12e4
  • 1.25e4
66.48
  • 66.48
  • 59.31
  • 55.08
  • 54.74
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
8.33e3
  • 8.33e3
66.46
  • 66.46
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
8.72e3
  • 8.72e3
64.88
  • 64.88
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
8.89e3
  • 8.89e3
64.21
  • 64.21
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.01e4
  • 1.01e4
59.35
  • 59.35
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
1.01e4
  • 1.01e4
59.29
  • 59.29
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
59.04
  • 59.04
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.08e4
  • 1.08e4
  • 1.13e4
  • 1.18e4
  • 1.43e4
56.65
  • 56.65
  • 54.59
  • 52.70
  • 42.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
55.27
  • 55.27
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.13e4
  • 1.13e4
  • 1.18e4
  • 1.33e4
54.48
  • 54.48
  • 52.33
  • 46.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.15e4
  • 1.15e4
53.81
  • 53.81
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
1.17e4
  • 1.17e4
53.07
  • 53.07
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
1.26e4
  • 1.26e4
49.44
  • 49.44
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.28e4
  • 1.28e4
  • 1.49e4
  • 1.59e4
48.49
  • 48.49
  • 39.96
  • 36.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
  • 1.43e4
  • 1.47e4
  • 1.55e4
42.36
  • 42.36
  • 42.26
  • 40.71
  • 37.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.57e4
  • 1.57e4
36.76
  • 36.76
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
1.81e4
  • 1.81e4
27.12
  • 27.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000016761.

Paralogs (same species)

Cross-references

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