P. troglodytes Gene: PRDM6 - ENSPTRG00000017180 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000017180
NamePRDM6
DescriptionPR domain containing 6 [Source:HGNC Symbol;Acc:HGNC:9350]
OrganismPan troglodytes (chimpanzee)
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.00e4
  • 1.00e4
  • 1.38e4
  • 1.58e4
  • 1.79e4
59.66
  • 59.66
  • 44.40
  • 36.48
  • 27.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
1.30e4
  • 1.30e4
47.59
  • 47.59
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
1.35e4
  • 1.35e4
45.50
  • 45.50
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.37e4
  • 1.37e4
  • 1.59e4
44.78
  • 44.78
  • 35.89
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.37e4
  • 1.37e4
  • 1.54e4
44.67
  • 44.67
  • 38.01
AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
1.45e4
  • 1.45e4
41.49
  • 41.49
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.48e4
  • 1.48e4
  • 1.54e4
  • 1.56e4
  • 1.64e4
  • 1.71e4
40.58
  • 40.58
  • 38.11
  • 37.09
  • 34.06
  • 31.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
1.53e4
  • 1.53e4
38.53
  • 38.53
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.54e4
  • 1.54e4
37.81
  • 37.81
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.61e4
  • 1.61e4
  • 1.93e4
35.38
  • 35.38
  • 22.28
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.64e4
  • 1.64e4
  • 1.89e4
34.17
  • 34.17
  • 24.01
AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
1.65e4
  • 1.65e4
33.56
  • 33.56
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.66e4
  • 1.66e4
  • 1.67e4
  • 1.68e4
  • 1.87e4
  • 2.02e4
33.03
  • 33.03
  • 32.80
  • 32.52
  • 24.53
  • 18.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.66e4
  • 1.66e4
  • 1.69e4
33.02
  • 33.02
  • 32.06
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae1 species1 geneCompare expression
Catarrhini2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000017180.

Cross-references

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