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P. troglodytes Gene: GABRA1 - ENSPTRG00000017499 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000017499
NameGABRA1
Descriptiongamma-aminobutyric acid (GABA) A receptor, alpha 1 [Source:HGNC Symbol;Acc:HGNC:4075]
OrganismPan troglodytes (chimpanzee)
Synonym(s)ejm5
Orthologs(s)15 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
469
  • 469
98.12
  • 98.12
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
538
  • 538
  • 1.44e3
97.84
  • 97.84
  • 94.20
AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
563
  • 563
97.74
  • 97.74
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
646
  • 646
  • 1.13e3
  • 1.15e3
  • 1.23e3
  • 3.36e3
97.41
  • 97.41
  • 95.48
  • 95.39
  • 95.05
  • 86.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
760
  • 760
96.94
  • 96.94
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0000112sexually immature stage
840
  • 840
  • 882
  • 1.65e3
  • 1.95e3
  • 2.81e3
  • 5.22e3
96.62
  • 96.62
  • 96.45
  • 93.38
  • 92.14
  • 88.70
  • 78.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
879
  • 879
  • 1.38e3
  • 2.95e3
96.47
  • 96.47
  • 94.44
  • 88.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
945
  • 945
96.20
  • 96.20
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.16e3
  • 1.16e3
  • 2.84e3
  • 6.48e3
95.33
  • 95.33
  • 88.57
  • 73.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.29e4
  • 1.29e4
47.90
  • 47.90
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
1.59e4
  • 1.59e4
36.13
  • 36.13
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
1.83e4
  • 1.83e4
26.37
  • 26.37
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae1 species1 geneCompare expression
Catarrhini2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000017499.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSPTRG00000017499.

Cross-references

EnsemblENSPTRG00000017499 (GABRA1)
HGNCHGNC:4075 (GABRA1)
EMBLAACZ03043586, AACZ03043587
Uniprot/SPTREMBLH2QRY4, H2QRY4_PANTR

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