P. troglodytes Gene: PTCHD4 - ENSPTRG00000018252 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000018252
NamePTCHD4
Descriptionpatched domain containing 4 [Source:HGNC Symbol;Acc:HGNC:21345]
OrganismPan troglodytes (chimpanzee)
Synonym(s)c6orf138, dj402h5.2, flj41841
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000057fibroblast
  • UBERON:0000104life cycle
9.49e3
  • 9.49e3
61.80
  • 61.80
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.17e4
  • 1.17e4
  • 1.64e4
52.85
  • 52.85
  • 34.13
AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
51.37
  • 51.37
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.43e4
  • 1.43e4
42.64
  • 42.64
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
42.55
  • 42.55
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.46e4
  • 1.46e4
  • 1.57e4
  • 1.57e4
41.40
  • 41.40
  • 36.91
  • 36.82
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.47e4
  • 1.47e4
  • 1.51e4
  • 1.53e4
  • 1.55e4
40.64
  • 40.64
  • 39.05
  • 38.23
  • 37.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
  • UBERON:0007222late adult stage
1.50e4
  • 1.50e4
  • 1.50e4
  • 1.55e4
  • 1.59e4
  • 1.67e4
  • 1.67e4
39.77
  • 39.77
  • 39.62
  • 37.68
  • 36.05
  • 32.97
  • 32.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.55e4
  • 1.55e4
  • 1.75e4
37.63
  • 37.63
  • 29.56
AEIR
  • AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
1.56e4
  • 1.56e4
37.17
  • 37.17
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.57e4
  • 1.57e4
  • 1.64e4
  • 1.65e4
36.79
  • 36.79
  • 34.00
  • 33.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
1.73e4
  • 1.73e4
30.39
  • 30.39
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000018252.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSPTRG00000018252.

Cross-references

Do not show this banner again