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P. troglodytes Gene: COL21A1 - ENSPTRG00000018302 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000018302
NameCOL21A1
Descriptioncollagen, type XXI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:17025]
OrganismPan troglodytes (chimpanzee)
Orthologs(s)13 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
3.58e3
  • 3.58e3
  • 5.69e3
  • 6.31e3
  • 7.73e3
85.59
  • 85.59
  • 77.08
  • 74.59
  • 68.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
4.07e3
  • 4.07e3
83.62
  • 83.62
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
9.52e3
  • 9.52e3
  • 1.12e4
  • 1.30e4
61.68
  • 61.68
  • 54.78
  • 47.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
9.71e3
  • 9.71e3
60.92
  • 60.92
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.06e4
  • 1.06e4
  • 1.16e4
  • 1.20e4
  • 1.23e4
  • 1.28e4
  • 1.45e4
57.16
  • 57.16
  • 53.45
  • 51.53
  • 50.65
  • 48.64
  • 41.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.08e4
  • 1.08e4
  • 1.12e4
  • 1.26e4
  • 1.44e4
56.54
  • 56.54
  • 55.11
  • 49.24
  • 42.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
1.08e4
  • 1.08e4
56.51
  • 56.51
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.12e4
  • 1.12e4
  • 1.19e4
  • 1.23e4
  • 1.23e4
  • 1.24e4
54.84
  • 54.84
  • 51.96
  • 50.65
  • 50.35
  • 50.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.18e4
  • 1.18e4
52.53
  • 52.53
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
51.56
  • 51.56
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.22e4
  • 1.22e4
  • 1.32e4
  • 1.34e4
51.04
  • 51.04
  • 47.06
  • 46.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.22e4
  • 1.22e4
51.03
  • 51.03
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
1.23e4
  • 1.23e4
50.66
  • 50.66
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.26e4
  • 1.26e4
49.13
  • 49.13
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
  • 1.47e4
46.57
  • 46.57
  • 40.71
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
46.45
  • 46.45
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
46.43
  • 46.43
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
45.93
  • 45.93
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
45.91
  • 45.91
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
44.47
  • 44.47
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.61e4
  • 1.61e4
  • 1.68e4
35.18
  • 35.18
  • 32.36
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires4 species4 genesCompare expression
Boreoeutheria8 species8 genesCompare expression
Theria9 species9 genesCompare expression
Amniota11 species11 genesCompare expression
Tetrapoda12 species12 genesCompare expression
Euteleostomi13 species13 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000018302.

Cross-references

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