P. troglodytes Gene: POPDC3 - ENSPTRG00000018455 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000018455
NamePOPDC3
Descriptionpopeye domain containing 3 [Source:HGNC Symbol;Acc:HGNC:17649]
OrganismPan troglodytes (chimpanzee)
Synonym(s)ba355m14.1, mgc22671, pop3
Orthologs(s)17 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
666
  • 666
97.32
  • 97.32
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
838
  • 838
96.63
  • 96.63
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.37e3
  • 1.37e3
  • 2.64e3
  • 4.54e3
  • 4.61e3
94.49
  • 94.49
  • 89.37
  • 81.73
  • 81.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
4.96e3
  • 4.96e3
80.04
  • 80.04
AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • UBERON:0000104life cycle
6.00e3
  • 6.00e3
75.83
  • 75.83
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
6.38e3
  • 6.38e3
74.31
  • 74.31
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
6.58e3
  • 6.58e3
  • 7.03e3
  • 7.61e3
  • 9.92e3
  • 1.21e4
73.51
  • 73.51
  • 71.70
  • 69.35
  • 60.09
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
6.93e3
  • 6.93e3
  • 8.39e3
72.09
  • 72.09
  • 66.21
AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
7.11e3
  • 7.11e3
71.40
  • 71.40
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
7.14e3
  • 7.14e3
  • 1.17e4
71.26
  • 71.26
  • 53.00
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
7.25e3
  • 7.25e3
  • 8.02e3
  • 8.06e3
  • 1.09e4
  • 1.15e4
  • 1.24e4
70.81
  • 70.81
  • 67.73
  • 67.57
  • 56.21
  • 53.52
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
7.55e3
  • 7.55e3
69.63
  • 69.63
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
7.90e3
  • 7.90e3
68.19
  • 68.19
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.28e4
  • 1.28e4
  • 1.36e4
  • 1.55e4
48.39
  • 48.39
  • 45.38
  • 37.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.37e4
  • 1.37e4
  • 1.54e4
44.87
  • 44.87
  • 38.20
AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
42.50
  • 42.50
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.62e4
  • 1.62e4
  • 2.02e4
34.84
  • 34.84
  • 18.88
AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
1.62e4
  • 1.62e4
34.82
  • 34.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000018455.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSPTRG00000018455.

Cross-references

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