P. troglodytes Gene: BRAT1 - ENSPTRG00000018865 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000018865
NameBRAT1
DescriptionBRCA1-associated ATM activator 1 [Source:HGNC Symbol;Acc:HGNC:21701]
OrganismPan troglodytes (chimpanzee)
Synonym(s)baat1, c7orf27, mgc22916
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002129cerebellar cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
3.79e3
  • 3.79e3
  • 4.44e3
  • 6.30e3
84.75
  • 84.75
  • 82.12
  • 74.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
4.85e3
  • 4.85e3
  • 5.52e3
80.46
  • 80.46
  • 77.78
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
5.38e3
  • 5.38e3
  • 6.44e3
  • 9.25e3
78.35
  • 78.35
  • 74.07
  • 62.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
5.45e3
  • 5.45e3
  • 5.82e3
  • 6.37e3
  • 6.88e3
  • 9.29e3
78.08
  • 78.08
  • 76.59
  • 74.36
  • 72.30
  • 62.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018685nursing stage
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.98e3
  • 5.98e3
  • 6.47e3
  • 7.32e3
  • 7.39e3
  • 8.67e3
  • 8.99e3
75.95
  • 75.95
  • 73.95
  • 70.54
  • 70.26
  • 65.10
  • 63.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
7.47e3
  • 7.47e3
  • 8.01e3
  • 8.27e3
  • 1.11e4
69.94
  • 69.94
  • 67.77
  • 66.69
  • 55.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
7.89e3
  • 7.89e3
  • 1.15e4
68.25
  • 68.25
  • 53.89
AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
8.31e3
  • 8.31e3
66.55
  • 66.55
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
8.67e3
  • 8.67e3
  • 1.02e4
  • 1.09e4
  • 1.29e4
65.09
  • 65.09
  • 58.98
  • 56.31
  • 48.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
8.71e3
  • 8.71e3
64.94
  • 64.94
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
8.92e3
  • 8.92e3
64.09
  • 64.09
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
9.15e3
  • 9.15e3
63.17
  • 63.17
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
9.61e3
  • 9.61e3
61.33
  • 61.33
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
1.03e4
  • 1.03e4
58.60
  • 58.60
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
52.13
  • 52.13
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
51.75
  • 51.75
AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
1.20e4
  • 1.20e4
51.66
  • 51.66
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
1.22e4
  • 1.22e4
50.76
  • 50.76
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
49.60
  • 49.60
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
46.47
  • 46.47
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
46.00
  • 46.00
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
39.40
  • 39.40
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
1.53e4
  • 1.53e4
38.60
  • 38.60
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000018865.

Cross-references

EnsemblENSPTRG00000018865 (BRAT1)
HGNCHGNC:21701 (BRAT1)
EMBLAC183670, GABC01010295
Uniprot/SPTREMBLH2QU38, H2QU38_PANTR

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