P. troglodytes Gene: OPN1SW - ENSPTRG00000019669 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000019669
NameOPN1SW
Descriptionopsin 1 (cone pigments), short-wave-sensitive [Source:HGNC Symbol;Acc:HGNC:1012]
OrganismPan troglodytes (chimpanzee)
Synonym(s)bcp, bop, cbt
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
48.98
  • 48.98
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
  • 1.62e4
  • 1.79e4
48.54
  • 48.54
  • 34.70
  • 28.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
1.36e4
  • 1.36e4
45.38
  • 45.38
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
1.37e4
  • 1.37e4
  • 1.43e4
  • 1.66e4
  • 1.69e4
  • 1.80e4
44.71
  • 44.71
  • 42.61
  • 33.12
  • 31.79
  • 27.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.39e4
  • 1.39e4
44.01
  • 44.01
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018685nursing stage
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
  • 1.43e4
  • 1.48e4
  • 1.57e4
  • 1.65e4
  • 1.83e4
43.79
  • 43.79
  • 42.29
  • 40.32
  • 36.68
  • 33.58
  • 26.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
1.50e4
  • 1.50e4
39.71
  • 39.71
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
  • 1.75e4
  • 1.86e4
39.32
  • 39.32
  • 29.53
  • 25.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
39.12
  • 39.12
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.53e4
  • 1.53e4
  • 1.60e4
  • 1.86e4
38.32
  • 38.32
  • 35.61
  • 25.04
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
1.55e4
  • 1.55e4
37.66
  • 37.66
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
1.57e4
  • 1.57e4
36.78
  • 36.78
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.68e4
  • 1.68e4
  • 1.76e4
32.45
  • 32.45
  • 29.00
AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.74e4
  • 1.74e4
30.15
  • 30.15
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.76e4
  • 1.76e4
29.16
  • 29.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000019669.

Cross-references

EnsemblENSPTRG00000019669 (OPN1SW)
HGNCHGNC:1012 (OPN1SW)
EMBLAF039433, AF039434, AF039435
Uniprot/SWISSPROTOPSB_PANTR, P60015

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