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P. troglodytes Gene: TNFRSF11B - ENSPTRG00000020528 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000020528
NameTNFRSF11B
Descriptiontumor necrosis factor receptor superfamily member 11b [Source:HGNC Symbol;Acc:HGNC:11909]
OrganismPan troglodytes (chimpanzee)
Synonym(s)ocif, opg, tr1
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000057fibroblast
  • UBERON:0000104life cycle
3.27e3
  • 3.27e3
86.86
  • 86.86
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
6.80e3
  • 6.80e3
  • 1.33e4
  • 1.40e4
72.65
  • 72.65
  • 46.39
  • 43.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
9.72e3
  • 9.72e3
  • 1.01e4
  • 1.04e4
  • 1.15e4
60.86
  • 60.86
  • 59.38
  • 58.26
  • 53.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
9.83e3
  • 9.83e3
60.44
  • 60.44
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
  • 1.42e4
55.49
  • 55.49
  • 42.79
AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
  • 1.36e4
  • 1.39e4
  • 1.40e4
  • 1.41e4
55.47
  • 55.47
  • 45.31
  • 44.23
  • 43.56
  • 43.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.15e4
  • 1.15e4
  • 1.27e4
  • 1.50e4
53.80
  • 53.80
  • 48.92
  • 39.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.18e4
  • 1.18e4
  • 1.24e4
  • 1.37e4
52.60
  • 52.60
  • 50.17
  • 44.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0000112sexually immature stage
1.28e4
  • 1.28e4
  • 1.31e4
  • 1.45e4
  • 1.52e4
  • 1.61e4
  • 1.67e4
48.63
  • 48.63
  • 47.45
  • 41.74
  • 38.99
  • 35.33
  • 32.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
46.78
  • 46.78
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.39e4
  • 1.39e4
44.13
  • 44.13
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
1.41e4
  • 1.41e4
43.38
  • 43.38
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.86e4
  • 1.86e4
25.11
  • 25.11
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae1 species1 geneCompare expression
Catarrhini2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000020528.

Cross-references

EnsemblENSPTRG00000020528 (TNFRSF11B)
HGNCHGNC:11909 (TNFRSF11B)
EMBLAACZ03062203
Uniprot/SPTREMBLH2QWM3, H2QWM3_PANTR

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