P. troglodytes Gene: RCL1 - ENSPTRG00000020743 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000020743
NameRCL1
DescriptionRNA terminal phosphate cyclase-like 1 [Source:HGNC Symbol;Acc:HGNC:17687]
OrganismPan troglodytes (chimpanzee)
Synonym(s)rnac, rpcl1
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
2.31e3
  • 2.31e3
90.70
  • 90.70
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
2.65e3
  • 2.65e3
  • 3.60e3
  • 3.61e3
  • 4.17e3
89.32
  • 89.32
  • 85.50
  • 85.45
  • 83.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
4.30e3
  • 4.30e3
82.67
  • 82.67
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
6.09e3
  • 6.09e3
  • 7.11e3
  • 7.18e3
  • 8.72e3
75.49
  • 75.49
  • 71.40
  • 71.11
  • 64.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
6.47e3
  • 6.47e3
73.97
  • 73.97
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
6.69e3
  • 6.69e3
  • 6.84e3
73.08
  • 73.08
  • 72.47
AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
7.23e3
  • 7.23e3
70.89
  • 70.89
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
7.41e3
  • 7.41e3
70.16
  • 70.16
AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
7.79e3
  • 7.79e3
68.63
  • 68.63
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
8.75e3
  • 8.75e3
  • 9.33e3
64.79
  • 64.79
  • 62.44
AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
9.43e3
  • 9.43e3
  • 1.08e4
  • 1.17e4
62.03
  • 62.03
  • 56.49
  • 52.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
9.85e3
  • 9.85e3
60.33
  • 60.33
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.01e4
  • 1.01e4
59.32
  • 59.32
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
1.02e4
  • 1.02e4
  • 1.07e4
  • 1.10e4
  • 1.11e4
  • 1.13e4
  • 1.15e4
58.86
  • 58.86
  • 56.81
  • 55.87
  • 55.27
  • 54.49
  • 53.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
1.03e4
  • 1.03e4
58.68
  • 58.68
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
  • 1.18e4
58.33
  • 58.33
  • 52.47
AEIR
  • AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
58.29
  • 58.29
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.04e4
  • 1.04e4
  • 1.04e4
  • 1.09e4
58.28
  • 58.28
  • 57.97
  • 56.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
1.05e4
  • 1.05e4
  • 1.07e4
  • 1.07e4
  • 1.09e4
  • 1.10e4
57.82
  • 57.82
  • 56.99
  • 56.76
  • 56.32
  • 55.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
1.07e4
  • 1.07e4
57.05
  • 57.05
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
55.39
  • 55.39
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
1.16e4
  • 1.16e4
53.11
  • 53.11
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
51.30
  • 51.30
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
47.44
  • 47.44
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000020743.

Cross-references

Do not show this banner again