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P. troglodytes Gene: LRRC8A - ENSPTRG00000021443 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000021443
NameLRRC8A
Descriptionleucine-rich repeat containing 8 family member A [Source:HGNC Symbol;Acc:HGNC:19027]
OrganismPan troglodytes (chimpanzee)
Synonym(s)flj10337, kiaa1437, lrrc8, swell1
Orthologs(s)19 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.88e3
  • 1.88e3
  • 3.38e3
  • 4.49e3
92.43
  • 92.43
  • 86.40
  • 81.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
2.24e3
  • 2.24e3
90.98
  • 90.98
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
2.35e3
  • 2.35e3
90.53
  • 90.53
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0007222late adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018685nursing stage
2.59e3
  • 2.59e3
  • 3.55e3
  • 4.39e3
  • 5.42e3
  • 5.78e3
  • 6.55e3
89.59
  • 89.59
  • 85.71
  • 82.34
  • 78.20
  • 76.73
  • 73.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
2.66e3
  • 2.66e3
  • 3.68e3
  • 5.43e3
  • 6.73e3
89.30
  • 89.30
  • 85.19
  • 78.14
  • 72.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
2.84e3
  • 2.84e3
  • 3.55e3
  • 6.34e3
88.58
  • 88.58
  • 85.72
  • 74.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
3.34e3
  • 3.34e3
  • 3.64e3
  • 3.83e3
  • 4.37e3
  • 4.56e3
86.54
  • 86.54
  • 85.36
  • 84.58
  • 82.40
  • 81.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
3.65e3
  • 3.65e3
  • 4.14e3
  • 4.80e3
  • 6.72e3
85.32
  • 85.32
  • 83.35
  • 80.68
  • 72.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
4.05e3
  • 4.05e3
83.68
  • 83.68
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
4.09e3
  • 4.09e3
83.54
  • 83.54
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
4.26e3
  • 4.26e3
  • 7.56e3
82.87
  • 82.87
  • 69.55
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
4.80e3
  • 4.80e3
  • 6.77e3
80.68
  • 80.68
  • 72.77
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
5.74e3
  • 5.74e3
76.90
  • 76.90
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
5.88e3
  • 5.88e3
76.35
  • 76.35
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
6.37e3
  • 6.37e3
74.38
  • 74.38
AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
6.78e3
  • 6.78e3
72.69
  • 72.69
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
7.48e3
  • 7.48e3
69.88
  • 69.88
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
7.82e3
  • 7.82e3
68.54
  • 68.54
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
9.16e3
  • 9.16e3
63.13
  • 63.13
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
9.81e3
  • 9.81e3
  • 1.01e4
60.50
  • 60.50
  • 59.30
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
9.99e3
  • 9.99e3
59.80
  • 59.80
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
1.01e4
  • 1.01e4
59.53
  • 59.53
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
51.31
  • 51.31
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.29e4
  • 1.29e4
48.04
  • 48.04
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species19 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000021443.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa3 genesCompare expression

Paralogy information comes from OMA : ENSPTRG00000021443.

Cross-references

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