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P. troglodytes Gene: BCO2 - ENSPTRG00000023726 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000023726
NameBCO2
Descriptionbeta-carotene oxygenase 2 [Source:HGNC Symbol;Acc:HGNC:18503]
OrganismPan troglodytes (chimpanzee)
Synonym(s)b-diox-ii, bcdo2, flj34464
Orthologs(s)22 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
2.04e3
  • 2.04e3
  • 2.51e3
  • 3.95e3
  • 6.36e3
91.78
  • 91.78
  • 89.90
  • 84.11
  • 74.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
2.23e3
  • 2.23e3
  • 3.32e3
  • 3.42e3
  • 6.43e3
91.01
  • 91.01
  • 86.65
  • 86.22
  • 74.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
7.49e3
  • 7.49e3
69.84
  • 69.84
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
7.57e3
  • 7.57e3
69.51
  • 69.51
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
7.64e3
  • 7.64e3
  • 9.10e3
  • 1.33e4
69.26
  • 69.26
  • 63.36
  • 46.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
7.74e3
  • 7.74e3
68.83
  • 68.83
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
8.06e3
  • 8.06e3
67.55
  • 67.55
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000112sexually immature stage
8.14e3
  • 8.14e3
  • 8.32e3
  • 8.44e3
  • 9.30e3
  • 1.12e4
  • 1.46e4
67.25
  • 67.25
  • 66.51
  • 66.02
  • 62.57
  • 54.72
  • 41.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
8.24e3
  • 8.24e3
  • 8.36e3
  • 8.82e3
  • 1.02e4
  • 1.30e4
66.81
  • 66.81
  • 66.33
  • 64.51
  • 58.83
  • 47.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
8.78e3
  • 8.78e3
64.66
  • 64.66
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
8.94e3
  • 8.94e3
  • 9.69e3
64.03
  • 64.03
  • 60.98
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
9.06e3
  • 9.06e3
63.53
  • 63.53
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
9.10e3
  • 9.10e3
  • 1.01e4
63.35
  • 63.35
  • 59.17
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
9.87e3
  • 9.87e3
60.27
  • 60.27
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
9.95e3
  • 9.95e3
59.94
  • 59.94
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.00e4
  • 1.00e4
  • 1.13e4
  • 1.36e4
59.64
  • 59.64
  • 54.40
  • 45.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
58.31
  • 58.31
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.10e4
  • 1.10e4
55.58
  • 55.58
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
  • 1.29e4
51.35
  • 51.35
  • 47.92
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
51.29
  • 51.29
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
50.22
  • 50.22
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
47.30
  • 47.30
AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
1.32e4
  • 1.32e4
46.67
  • 46.67
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
1.35e4
  • 1.35e4
45.64
  • 45.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species18 genesCompare expression
Euteleostomi18 species20 genesCompare expression
Bilateria19 species22 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000023726.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression
Opisthokonta2 genesCompare expression

Paralogy information comes from OMA : ENSPTRG00000023726.

Cross-references

EnsemblENSPTRG00000023726 (BCO2)
HGNCHGNC:18503 (BCO2)
EMBLAACZ03080546, AACZ03080547
Uniprot/SPTREMBLH2R4A4, H2R4A4_PANTR

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