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P. troglodytes Gene: SERTAD1 - ENSPTRG00000029014 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000029014
NameSERTAD1
DescriptionSERTA domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17932]
OrganismPan troglodytes (chimpanzee)
Synonym(s)sei1, trip-br1
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0018241prime adult stage
1.66e3
  • 1.66e3
93.33
  • 93.33
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
2.92e3
  • 2.92e3
88.23
  • 88.23
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
3.17e3
  • 3.17e3
  • 3.84e3
  • 5.09e3
  • 6.11e3
87.25
  • 87.25
  • 84.55
  • 79.50
  • 75.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
3.32e3
  • 3.32e3
86.66
  • 86.66
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
3.46e3
  • 3.46e3
86.07
  • 86.07
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
3.66e3
  • 3.66e3
  • 4.05e3
85.29
  • 85.29
  • 83.71
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
3.79e3
  • 3.79e3
  • 4.90e3
  • 5.15e3
  • 6.51e3
84.73
  • 84.73
  • 80.28
  • 79.27
  • 73.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
3.93e3
  • 3.93e3
84.19
  • 84.19
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
4.92e3
  • 4.92e3
80.19
  • 80.19
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
5.25e3
  • 5.25e3
  • 6.06e3
  • 6.57e3
  • 8.27e3
  • 9.33e3
78.86
  • 78.86
  • 75.62
  • 73.57
  • 66.73
  • 62.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
5.77e3
  • 5.77e3
  • 7.53e3
  • 8.33e3
  • 9.27e3
  • 9.33e3
  • 9.68e3
76.78
  • 76.78
  • 69.68
  • 66.46
  • 62.70
  • 62.46
  • 61.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
6.00e3
  • 6.00e3
75.84
  • 75.84
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
6.45e3
  • 6.45e3
74.05
  • 74.05
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
7.20e3
  • 7.20e3
71.02
  • 71.02
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
7.58e3
  • 7.58e3
69.49
  • 69.49
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
7.76e3
  • 7.76e3
68.76
  • 68.76
AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
8.18e3
  • 8.18e3
67.07
  • 67.07
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
8.42e3
  • 8.42e3
66.09
  • 66.09
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
8.54e3
  • 8.54e3
  • 1.09e4
  • 1.36e4
65.63
  • 65.63
  • 56.18
  • 45.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
8.55e3
  • 8.55e3
  • 8.95e3
  • 9.45e3
65.57
  • 65.57
  • 63.99
  • 61.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
9.09e3
  • 9.09e3
63.41
  • 63.41
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
9.40e3
  • 9.40e3
62.16
  • 62.16
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
9.74e3
  • 9.74e3
  • 1.08e4
60.78
  • 60.78
  • 56.68
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Theria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000029014.

Cross-references

EnsemblENSPTRG00000029014 (SERTAD1)
HGNCHGNC:17932 (SERTAD1)
EMBLAACZ03119060, AACZ03119061
Uniprot/SPTREMBLH2R636, H2R636_PANTR

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