R. norvegicus Gene: Tmcc2 - ENSRNOG00000000033 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000000033
NameTmcc2
Descriptiontransmembrane and coiled-coil domain family 2 [Source:RGD Symbol;Acc:1311960]
OrganismRattus norvegicus (rat)
Synonym(s)loc305095, rgd1311960, rgd1311960_predicted
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
563
  • 563
  • 1.64e3
97.95
  • 97.95
  • 94.03
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.24e3
  • 1.24e3
  • 3.15e3
95.48
  • 95.48
  • 88.54
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
2.19e3
  • 2.19e3
92.04
  • 92.04
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
2.69e3
  • 2.69e3
90.20
  • 90.20
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
2.85e3
  • 2.85e3
89.62
  • 89.62
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
2.89e3
  • 2.89e3
  • 2.90e3
89.47
  • 89.47
  • 89.43
AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
3.14e3
  • 3.14e3
88.55
  • 88.55
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
3.21e3
  • 3.21e3
88.30
  • 88.30
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
5.26e3
  • 5.26e3
80.85
  • 80.85
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
6.72e3
  • 6.72e3
75.51
  • 75.51
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
7.70e3
  • 7.70e3
  • 1.48e4
71.97
  • 71.97
  • 45.94
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
1.08e4
  • 1.08e4
  • 1.09e4
  • 1.16e4
60.75
  • 60.75
  • 60.47
  • 57.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.09e4
  • 1.09e4
60.44
  • 60.44
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.17e4
  • 1.17e4
57.49
  • 57.49
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
56.13
  • 56.13
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
54.94
  • 54.94
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
54.22
  • 54.22
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
54.17
  • 54.17
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.27e4
  • 1.27e4
53.60
  • 53.60
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.33e4
  • 1.33e4
51.55
  • 51.55
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
50.21
  • 50.21
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000000033.

Cross-references

EnsemblENSRNOG00000000033 (Tmcc2)
RGD1311960 (Tmcc2)
EMBLAABR07020967, AABR07020968, CH473958
Uniprot/SPTREMBLD3ZE26, D3ZE26_RAT

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