R. norvegicus Gene: Smpd3 - ENSRNOG00000000257 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000000257
NameSmpd3
Descriptionsphingomyelin phosphodiesterase 3, neutral membrane [Source:RGD Symbol;Acc:619754]
OrganismRattus norvegicus (rat)
Synonym(s)cca1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
2.18e3
  • 2.18e3
92.06835
  • 92.06835
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
2.72e3
  • 2.72e3
90.07018
  • 90.07018
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
2.91e3
  • 2.91e3
89.40165
  • 89.40165
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.93e3
  • 2.93e3
  • 5.27e3
89.32049
  • 89.32049
  • 80.78911
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
3.59e3
  • 3.59e3
86.89995
  • 86.89995
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
4.03e3
  • 4.03e3
85.28960
  • 85.28960
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
5.27e3
  • 5.27e3
80.78462
  • 80.78462
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
5.76e3
  • 5.76e3
  • 6.19e3
79.00062
  • 79.00062
  • 77.42477
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
6.54e3
  • 6.54e3
76.15932
  • 76.15932
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
7.74e3
  • 7.74e3
  • 8.08e3
71.78287
  • 71.78287
  • 70.53412
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
8.85e3
  • 8.85e3
  • 1.53e4
67.73170
  • 67.73170
  • 44.13462
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
8.94e3
  • 8.94e3
  • 9.47e3
67.41226
  • 67.41226
  • 65.46292
AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
9.60e3
  • 9.60e3
64.97148
  • 64.97148
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
9.65e3
  • 9.65e3
64.78885
  • 64.78885
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.02e4
  • 1.02e4
62.87894
  • 62.87894
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.19e4
  • 1.19e4
56.58533
  • 56.58533
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.27e4
  • 1.27e4
53.52296
  • 53.52296
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.32e4
  • 1.32e4
51.85082
  • 51.85082
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.52e4
  • 1.52e4
44.45464
  • 44.45464
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.52e4
  • 1.52e4
44.44305
  • 44.44305
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.54e4
  • 1.54e4
43.89299
  • 43.89299
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Cross-references

EMBLAABR07043748
EnsemblENSRNOG00000000257 (Smpd3)
RGD619754 (Smpd3)
Uniprot/SPTREMBLD4A8L3, D4A8L3_RAT

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