R. norvegicus Gene: Smpd2 - ENSRNOG00000000306 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000000306
NameSmpd2
Descriptionsphingomyelin phosphodiesterase 2, neutral membrane [Source:RGD Symbol;Acc:619753]
OrganismRattus norvegicus (rat)
Synonym(s)lyso-paf-plc, nsmase, q5bkb2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.53e3
  • 1.53e3
94.42040
  • 94.42040
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.71e3
  • 1.71e3
  • 3.60e3
93.78123
  • 93.78123
  • 86.86392
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.95e3
  • 1.95e3
92.89474
  • 92.89474
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
2.30e3
  • 2.30e3
91.60940
  • 91.60940
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
3.76e3
  • 3.76e3
  • 9.92e3
86.30412
  • 86.30412
  • 63.82051
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
4.30e3
  • 4.30e3
84.31375
  • 84.31375
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
4.68e3
  • 4.68e3
82.92220
  • 82.92220
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
4.75e3
  • 4.75e3
  • 6.91e3
82.66324
  • 82.66324
  • 74.80519
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
5.23e3
  • 5.23e3
80.91316
  • 80.91316
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
5.66e3
  • 5.66e3
79.35660
  • 79.35660
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
5.72e3
  • 5.72e3
79.15432
  • 79.15432
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
5.93e3
  • 5.93e3
78.37221
  • 78.37221
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
6.78e3
  • 6.78e3
75.26907
  • 75.26907
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
7.07e3
  • 7.07e3
74.20848
  • 74.20848
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
7.11e3
  • 7.11e3
74.08542
  • 74.08542
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
8.01e3
  • 8.01e3
70.79841
  • 70.79841
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
8.22e3
  • 8.22e3
70.01306
  • 70.01306
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
8.43e3
  • 8.43e3
69.25433
  • 69.25433
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
8.59e3
  • 8.59e3
68.68158
  • 68.68158
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
9.63e3
  • 9.63e3
  • 1.03e4
64.86180
  • 64.86180
  • 62.29598
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
9.92e3
  • 9.92e3
  • 1.01e4
63.81143
  • 63.81143
  • 63.03129
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.04e4
  • 1.04e4
62.15673
  • 62.15673
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Cross-references

EMBLAB047002, BC091139
EnsemblENSRNOG00000000306 (Smpd2)
RGD619753 (Smpd2)
Uniprot/SWISSPROTNSMA_RAT, Q9ET64

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