R. norvegicus Gene: Col11a2 - ENSRNOG00000000463 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000000463
NameCol11a2
Descriptioncollagen, type XI, alpha 2 [Source:RGD Symbol;Acc:2373]
OrganismRattus norvegicus (rat)
Synonym(s)aa926063, b3galt4gn, col11a2_mapped, daxxgn, kifc1gn,gn loc224733l-2,gn rps25-ps1,gn rt1-a2, rt1-doagn, rt1-ke4gn, sacm2l-ps1gn, sec61-psgn

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.94e3
  • 1.94e3
  • 2.51e3
92.91133
  • 92.91133
  • 90.84878
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
5.81e3
  • 5.81e3
78.80797
  • 78.80797
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
6.57e3
  • 6.57e3
76.05854
  • 76.05854
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
6.72e3
  • 6.72e3
75.51100
  • 75.51100
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
9.04e3
  • 9.04e3
  • 9.26e3
67.03928
  • 67.03928
  • 66.22205
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.00e4
  • 1.00e4
  • 1.75e4
63.44968
  • 63.44968
  • 36.00416
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
63.15326
  • 63.15326
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.07e4
  • 1.07e4
60.93354
  • 60.93354
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
59.10964
  • 59.10964
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.23e4
  • 1.23e4
55.05106
  • 55.05106
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
54.61236
  • 54.61236
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.29e4
  • 1.29e4
53.07138
  • 53.07138
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.29e4
  • 1.29e4
52.91972
  • 52.91972
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.31e4
  • 1.31e4
52.09239
  • 52.09239
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
49.67571
  • 49.67571
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
48.80213
  • 48.80213
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.42e4
  • 1.42e4
48.27873
  • 48.27873
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.42e4
  • 1.42e4
48.22606
  • 48.22606
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.44e4
  • 1.44e4
47.50195
  • 47.50195
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.55e4
  • 1.55e4
43.64960
  • 43.64960
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
1.65e4
  • 1.65e4
39.91917
  • 39.91917
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Cross-references

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