R. norvegicus Gene: Vps52 - ENSRNOG00000000470 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000000470
NameVps52
Descriptionvacuolar protein sorting 52 homolog (S. cerevisiae) [Source:RGD Symbol;Acc:3618]
OrganismRattus norvegicus (rat)
Synonym(s)are1, sacm2l

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.40e3
  • 1.40e3
  • 3.29e3
94.90262
  • 94.90262
  • 87.99252
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.98e3
  • 1.98e3
92.76748
  • 92.76748
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
2.02e3
  • 2.02e3
92.65241
  • 92.65241
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
2.30e3
  • 2.30e3
91.62199
  • 91.62199
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
2.73e3
  • 2.73e3
90.03020
  • 90.03020
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.78e3
  • 2.78e3
  • 7.50e3
89.87727
  • 89.87727
  • 72.65200
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
2.96e3
  • 2.96e3
89.20972
  • 89.20972
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
3.11e3
  • 3.11e3
88.67433
  • 88.67433
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
3.13e3
  • 3.13e3
88.59073
  • 88.59073
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
3.34e3
  • 3.34e3
87.81563
  • 87.81563
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
3.39e3
  • 3.39e3
87.65179
  • 87.65179
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
3.45e3
  • 3.45e3
87.40967
  • 87.40967
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
3.52e3
  • 3.52e3
87.16701
  • 87.16701
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
3.72e3
  • 3.72e3
86.44082
  • 86.44082
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
3.93e3
  • 3.93e3
85.67334
  • 85.67334
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
3.95e3
  • 3.95e3
85.59489
  • 85.59489
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
4.08e3
  • 4.08e3
85.12160
  • 85.12160
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
4.13e3
  • 4.13e3
  • 4.22e3
84.92957
  • 84.92957
  • 84.62531
AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
4.17e3
  • 4.17e3
84.80530
  • 84.80530
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
4.19e3
  • 4.19e3
84.70445
  • 84.70445
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
7.30e3
  • 7.30e3
  • 1.25e4
73.38731
  • 73.38731
  • 54.45162
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
1.46e4
  • 1.46e4
  • 1.46e4
46.78922
  • 46.78922
  • 46.74866
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Cross-references

EMBLAC128962, AJ223830, BC166419, BX883042, CH473988
EnsemblENSRNOG00000000470 (Vps52)
RGD3618 (Vps52)
Uniprot/SPTREMBLB2GUV2, B2GUV2_RAT
Uniprot/SWISSPROTO55166, VPS52_RAT

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