R. norvegicus Gene: Hmga1 - ENSRNOG00000000488 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000000488
NameHmga1
Descriptionhigh mobility group AT-hook 1 [Source:RGD Symbol;Acc:628699]
OrganismRattus norvegicus (rat)
Synonym(s)hmg-i(y), hmgi, hmgiy, loc689053, q8k1f5

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
691
  • 691
97.48222
  • 97.48222
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
746
  • 746
97.28176
  • 97.28176
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
867
  • 867
  • 1.39e3
96.84130
  • 96.84130
  • 94.95076
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.02e3
  • 1.02e3
  • 2.26e4
96.28296
  • 96.28296
  • 17.62593
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.53e3
  • 1.53e3
94.42521
  • 94.42521
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.62e3
  • 1.62e3
94.07878
  • 94.07878
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.85e3
  • 1.85e3
93.25623
  • 93.25623
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.98e3
  • 1.98e3
92.77328
  • 92.77328
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
2.25e3
  • 2.25e3
91.80089
  • 91.80089
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
2.27e3
  • 2.27e3
91.70609
  • 91.70609
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
2.55e3
  • 2.55e3
90.71518
  • 90.71518
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
2.85e3
  • 2.85e3
89.62472
  • 89.62472
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
2.93e3
  • 2.93e3
89.32407
  • 89.32407
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
3.42e3
  • 3.42e3
87.54422
  • 87.54422
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
4.09e3
  • 4.09e3
85.09137
  • 85.09137
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
4.09e3
  • 4.09e3
85.08188
  • 85.08188
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
4.20e3
  • 4.20e3
84.69402
  • 84.69402
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
4.45e3
  • 4.45e3
  • 4.96e3
83.77474
  • 83.77474
  • 81.90367
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
5.81e3
  • 5.81e3
78.81052
  • 78.81052
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
6.33e3
  • 6.33e3
  • 9.92e3
76.91454
  • 76.91454
  • 63.83477
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.18e4
  • 1.18e4
56.84790
  • 56.84790
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Cross-references

EMBLAF507966, AF511040
EnsemblENSRNOG00000000488 (Hmga1)
RGD628699 (Hmga1)
Uniprot/SWISSPROTHMGA1_RAT, Q8K585

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