R. norvegicus Gene: Cmtr1 - ENSRNOG00000000532 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000000532
NameCmtr1
Descriptioncap methyltransferase 1 [Source:RGD Symbol;Acc:1307801]
OrganismRattus norvegicus (rat)
Synonym(s)ftsjd2, loc309656, lrrg00129, mtr1, rgd1307801, rgd1307801gn

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
3.33e3
  • 3.33e3
87.86067
  • 87.86067
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
3.60e3
  • 3.60e3
86.86691
  • 86.86691
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
3.65e3
  • 3.65e3
86.67378
  • 86.67378
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
3.66e3
  • 3.66e3
  • 5.57e3
86.67042
  • 86.67042
  • 79.68778
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
3.76e3
  • 3.76e3
  • 4.16e3
86.27837
  • 86.27837
  • 84.82693
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
3.79e3
  • 3.79e3
  • 3.85e3
86.16256
  • 86.16256
  • 85.94948
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
3.99e3
  • 3.99e3
85.43331
  • 85.43331
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
4.26e3
  • 4.26e3
84.45220
  • 84.45220
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
4.41e3
  • 4.41e3
83.92333
  • 83.92333
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
4.48e3
  • 4.48e3
83.67290
  • 83.67290
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
4.53e3
  • 4.53e3
83.49564
  • 83.49564
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
4.64e3
  • 4.64e3
83.08298
  • 83.08298
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
4.65e3
  • 4.65e3
83.05898
  • 83.05898
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
4.65e3
  • 4.65e3
83.03932
  • 83.03932
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
4.67e3
  • 4.67e3
82.97268
  • 82.97268
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
4.81e3
  • 4.81e3
  • 6.94e3
82.47744
  • 82.47744
  • 74.70912
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
4.81e3
  • 4.81e3
  • 4.92e3
82.44465
  • 82.44465
  • 82.06948
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
5.02e3
  • 5.02e3
81.68096
  • 81.68096
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
5.11e3
  • 5.11e3
81.38214
  • 81.38214
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
5.82e3
  • 5.82e3
78.76628
  • 78.76628
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
6.13e3
  • 6.13e3
77.64602
  • 77.64602
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Cross-references

EMBLAABR07044502, AY539880, BC085799
EnsemblENSRNOG00000000532 (Cmtr1)
RGD1307801 (Cmtr1)
Uniprot/SPTREMBLQ6QI79, Q6QI79_RAT
Uniprot/SWISSPROTCMTR1_RAT, Q5U2Z5

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