R. norvegicus Gene: Ube2d1 - ENSRNOG00000000611 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000000611
NameUbe2d1
Descriptionubiquitin-conjugating enzyme E2D 1 [Source:RGD Symbol;Acc:1307886]
OrganismRattus norvegicus (rat)
Synonym(s)loc361831

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
313
  • 313
98.86206
  • 98.86206
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
390
  • 390
98.58132
  • 98.58132
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.06e3
  • 1.06e3
  • 4.00e3
96.14108
  • 96.14108
  • 85.42390
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.78e3
  • 1.78e3
93.52515
  • 93.52515
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
2.27e3
  • 2.27e3
91.74060
  • 91.74060
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
2.36e3
  • 2.36e3
91.39282
  • 91.39282
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
3.36e3
  • 3.36e3
  • 5.56e3
87.73524
  • 87.73524
  • 79.73443
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
4.61e3
  • 4.61e3
  • 4.72e3
83.20261
  • 83.20261
  • 82.77306
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
4.85e3
  • 4.85e3
82.31590
  • 82.31590
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
5.56e3
  • 5.56e3
  • 1.10e4
79.74250
  • 79.74250
  • 59.99150
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
5.99e3
  • 5.99e3
78.14859
  • 78.14859
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
6.54e3
  • 6.54e3
76.15315
  • 76.15315
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
6.63e3
  • 6.63e3
75.80556
  • 75.80556
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
6.99e3
  • 6.99e3
74.49400
  • 74.49400
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
7.33e3
  • 7.33e3
73.26567
  • 73.26567
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
7.37e3
  • 7.37e3
  • 8.87e3
73.10997
  • 73.10997
  • 67.66386
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
7.50e3
  • 7.50e3
72.65215
  • 72.65215
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
7.86e3
  • 7.86e3
71.35106
  • 71.35106
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
8.11e3
  • 8.11e3
70.41730
  • 70.41730
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
8.41e3
  • 8.41e3
69.31769
  • 69.31769
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
9.35e3
  • 9.35e3
65.91283
  • 65.91283
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.11e4
  • 1.11e4
59.54991
  • 59.54991
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Cross-references

EMBLAC132039, CH473988
EnsemblENSRNOG00000000611 (Ube2d1)
RGD1307886 (Ube2d1)
Uniprot/SPTREMBLR9PXR2, R9PXR2_RAT
Uniprot/SWISSPROTD3ZDK2, UB2D1_RAT

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