R. norvegicus Gene: Jmjd1c - ENSRNOG00000000648 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000000648
NameJmjd1c
Descriptionjumonji domain containing 1C [Source:RGD Symbol;Acc:708458]
OrganismRattus norvegicus (rat)
Synonym(s)loc171120, loc309738, pr2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
4.91e3
  • 4.91e3
82.10297
  • 82.10297
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
4.93e3
  • 4.93e3
82.00405
  • 82.00405
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
5.16e3
  • 5.16e3
  • 5.21e3
81.18401
  • 81.18401
  • 80.99427
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
5.23e3
  • 5.23e3
80.94175
  • 80.94175
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
5.31e3
  • 5.31e3
80.63016
  • 80.63016
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
5.35e3
  • 5.35e3
80.48539
  • 80.48539
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
5.43e3
  • 5.43e3
80.20564
  • 80.20564
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
5.82e3
  • 5.82e3
  • 8.11e3
78.77988
  • 78.77988
  • 70.40748
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
6.20e3
  • 6.20e3
77.39330
  • 77.39330
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
6.37e3
  • 6.37e3
76.77291
  • 76.77291
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
6.38e3
  • 6.38e3
76.74516
  • 76.74516
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
6.40e3
  • 6.40e3
  • 6.42e3
76.67141
  • 76.67141
  • 76.57041
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
6.42e3
  • 6.42e3
76.58613
  • 76.58613
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
6.62e3
  • 6.62e3
75.87573
  • 75.87573
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
6.84e3
  • 6.84e3
75.07386
  • 75.07386
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
6.99e3
  • 6.99e3
74.51508
  • 74.51508
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
7.02e3
  • 7.02e3
74.39027
  • 74.39027
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
7.16e3
  • 7.16e3
73.89944
  • 73.89944
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
7.17e3
  • 7.17e3
73.85651
  • 73.85651
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
7.90e3
  • 7.90e3
  • 8.97e3
71.18576
  • 71.18576
  • 67.28034
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
8.04e3
  • 8.04e3
70.67294
  • 70.67294
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Cross-references

EMBLAABR07044833, AABR07044834
EnsemblENSRNOG00000000648 (Jmjd1c)
RGD708458 (Jmjd1c)
Uniprot/SPTREMBLF1LMK8, F1LMK8_RAT

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