R. norvegicus Gene: Gja1 - ENSRNOG00000000805 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000000805
NameGja1
Descriptiongap junction protein, alpha 1 [Source:RGD Symbol;Acc:2690]
OrganismRattus norvegicus (rat)
Synonym(s)cx43, cxn-43, mgc93610, q53ze1
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
300
  • 300
98.91
  • 98.91
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
440
  • 440
98.40
  • 98.40
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
633
  • 633
  • 834
97.70
  • 97.70
  • 96.97
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
654
  • 654
  • 4.06e3
97.62
  • 97.62
  • 85.21
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
687
  • 687
97.50
  • 97.50
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
756
  • 756
  • 787
97.25
  • 97.25
  • 97.14
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.27e3
  • 1.27e3
95.38
  • 95.38
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
2.07e3
  • 2.07e3
92.46
  • 92.46
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
2.85e3
  • 2.85e3
89.63
  • 89.63
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
3.27e3
  • 3.27e3
88.09
  • 88.09
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
4.85e3
  • 4.85e3
82.33
  • 82.33
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
5.09e3
  • 5.09e3
81.47
  • 81.47
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
5.16e3
  • 5.16e3
81.19
  • 81.19
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
5.72e3
  • 5.72e3
79.15
  • 79.15
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
5.83e3
  • 5.83e3
78.75
  • 78.75
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
6.25e3
  • 6.25e3
77.25
  • 77.25
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
6.77e3
  • 6.77e3
  • 6.91e3
  • 7.74e3
75.35
  • 75.35
  • 74.84
  • 71.79
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
6.93e3
  • 6.93e3
  • 9.63e3
74.74
  • 74.74
  • 64.94
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
7.04e3
  • 7.04e3
74.36
  • 74.36
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
8.15e3
  • 8.15e3
70.30
  • 70.30
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
8.17e3
  • 8.17e3
70.24
  • 70.24
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.04e4
  • 1.04e4
62.26
  • 62.26
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires6 species7 genesCompare expression
Boreoeutheria11 species12 genesCompare expression
Theria12 species13 genesCompare expression
Mammalia13 species14 genesCompare expression
Amniota15 species16 genesCompare expression
Tetrapoda16 species17 genesCompare expression
Euteleostomi17 species18 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000000805.

Cross-references

EnsemblENSRNOG00000000805 (Gja1)
RGD2690 (Gja1)
EMBLAY324140, BC081842, X06656
Uniprot/SWISSPROTCXA1_RAT, P08050

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