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R. norvegicus Gene: Cox6a1 - ENSRNOG00000001170 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000001170
NameCox6a1
Descriptioncytochrome c oxidase, subunit VIa, polypeptide 1 [Source:RGD Symbol;Acc:2384]
OrganismRattus norvegicus (rat)
Synonym(s)cox6al
Orthologs(s)22 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
18.0
  • 18.0
  • 87.9
99.94
  • 99.94
  • 99.68
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
67.0
  • 67.0
99.76
  • 99.76
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
69.9
  • 69.9
  • 73.5
99.75
  • 99.75
  • 99.74
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
71.7
  • 71.7
99.74
  • 99.74
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
94.6
  • 94.6
99.66
  • 99.66
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
114
  • 114
99.59
  • 99.59
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
121
  • 121
99.56
  • 99.56
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
126
  • 126
99.55
  • 99.55
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
128
  • 128
99.54
  • 99.54
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
133
  • 133
  • 749
99.52
  • 99.52
  • 97.28
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
175
  • 175
99.37
  • 99.37
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
209
  • 209
  • 250
  • 336
99.24
  • 99.24
  • 99.09
  • 98.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
213
  • 213
99.23
  • 99.23
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
248
  • 248
99.10
  • 99.10
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
260
  • 260
99.06
  • 99.06
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
276
  • 276
99.00
  • 99.00
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
321
  • 321
  • 324
98.83
  • 98.83
  • 98.82
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
365
  • 365
98.67
  • 98.67
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
385
  • 385
98.60
  • 98.60
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
400
  • 400
98.55
  • 98.55
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
743
  • 743
97.30
  • 97.30
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.14e3
  • 1.14e3
95.86
  • 95.86
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species10 genesCompare expression
Boreoeutheria12 species17 genesCompare expression
Theria13 species18 genesCompare expression
Amniota15 species20 genesCompare expression
Tetrapoda16 species22 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000001170.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Sarcopterygii1 geneCompare expression

Paralogy information comes from OMA : ENSRNOG00000001170.

Cross-references

EnsemblENSRNOG00000001170 (Cox6a1)
RGD2384 (Cox6a1)
EMBLX12553, X72757
Uniprot/SWISSPROTCX6A1_RAT, P10818

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