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R. norvegicus Gene: Sds - ENSRNOG00000001388 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000001388
NameSds
Descriptionserine dehydratase [Source:RGD Symbol;Acc:67376]
OrganismRattus norvegicus (rat)
Synonym(s)mgc108581, ratsdhe1, sdh, sdh2, sdhe1, tdh
Orthologs(s)14 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
404
  • 404
  • 3.54e3
  • 3.85e3
98.53
  • 98.53
  • 87.09
  • 85.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
3.40e3
  • 3.40e3
  • 3.50e3
87.60
  • 87.60
  • 87.27
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
8.12e3
  • 8.12e3
70.43
  • 70.43
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.07e4
  • 1.07e4
61.00
  • 61.00
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.36e4
  • 1.36e4
50.54
  • 50.54
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
49.87
  • 49.87
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
  • 1.41e4
48.72
  • 48.72
  • 48.62
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.44e4
  • 1.44e4
  • 2.26e4
47.70
  • 47.70
  • 17.63
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.49e4
  • 1.49e4
45.79
  • 45.79
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.50e4
  • 1.50e4
45.19
  • 45.19
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.52e4
  • 1.52e4
44.74
  • 44.74
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.57e4
  • 1.57e4
42.75
  • 42.75
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.59e4
  • 1.59e4
42.05
  • 42.05
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.59e4
  • 1.59e4
41.93
  • 41.93
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.60e4
  • 1.60e4
41.76
  • 41.76
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.61e4
  • 1.61e4
41.35
  • 41.35
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.63e4
  • 1.63e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.72e4
  • 1.72e4
37.39
  • 37.39
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.74e4
  • 1.74e4
36.49
  • 36.49
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.78e4
  • 1.78e4
35.03
  • 35.03
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.93e4
  • 1.93e4
29.73
  • 29.73
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000001388.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota2 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000001388.

Cross-references

EnsemblENSRNOG00000001388 (Sds)
RGD67376 (Sds)
EMBLAABR07036391
Uniprot/SPTREMBLF1LMK6, F1LMK6_RAT
Uniprot/SWISSPROTP09367, SDHL_RAT

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