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R. norvegicus Gene: Rab4b - ENSRNOG00000001500 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000001500
NameRab4b
DescriptionRAB4B, member RAS oncogene family [Source:RGD Symbol;Acc:620931]
OrganismRattus norvegicus (rat)
Orthologs(s)21 orthologs
Paralog(s)65 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
968
  • 968
  • 2.65e3
96.48
  • 96.48
  • 90.36
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.75e3
  • 1.75e3
93.62
  • 93.62
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
2.34e3
  • 2.34e3
91.49
  • 91.49
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.49e3
  • 2.49e3
  • 2.85e3
90.92
  • 90.92
  • 89.63
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
2.50e3
  • 2.50e3
90.89
  • 90.89
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.73e3
  • 2.73e3
  • 4.20e3
90.05
  • 90.05
  • 84.71
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
3.06e3
  • 3.06e3
88.85
  • 88.85
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
3.13e3
  • 3.13e3
88.60
  • 88.60
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
3.48e3
  • 3.48e3
87.33
  • 87.33
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
3.57e3
  • 3.57e3
87.02
  • 87.02
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
3.60e3
  • 3.60e3
86.87
  • 86.87
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
4.05e3
  • 4.05e3
85.24
  • 85.24
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
4.12e3
  • 4.12e3
  • 6.08e3
  • 6.45e3
84.98
  • 84.98
  • 77.85
  • 76.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
4.30e3
  • 4.30e3
84.32
  • 84.32
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
4.34e3
  • 4.34e3
84.18
  • 84.18
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
4.87e3
  • 4.87e3
82.27
  • 82.27
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
5.26e3
  • 5.26e3
80.84
  • 80.84
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
5.32e3
  • 5.32e3
80.61
  • 80.61
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
5.52e3
  • 5.52e3
79.89
  • 79.89
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
5.80e3
  • 5.80e3
78.86
  • 78.86
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
6.69e3
  • 6.69e3
75.62
  • 75.62
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.22e4
  • 1.22e4
  • 1.23e4
55.47
  • 55.47
  • 55.31
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression
Bilateria21 species21 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000001500.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Opisthokonta15 genesCompare expression
Eukaryota65 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000001500.

Cross-references

EnsemblENSRNOG00000001500 (Rab4b)
RGD620931 (Rab4b)
EMBLX78605
Uniprot/SWISSPROTP51146, RAB4B_RAT

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