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R. norvegicus Gene: RGD1563888 - ENSRNOG00000001554 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000001554
NameRGD1563888
Descriptionsimilar to DNA segment, Chr 16, ERATO Doi 472, expressed [Source:RGD Symbol;Acc:1563888]
OrganismRattus norvegicus (rat)
Synonym(s)loc100909817, loc360692, rgd1563888_predicted
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.54e3
  • 1.54e3
  • 2.88e3
94.38
  • 94.38
  • 89.53
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
3.32e3
  • 3.32e3
87.90
  • 87.90
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
3.95e3
  • 3.95e3
85.63
  • 85.63
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
5.34e3
  • 5.34e3
80.55
  • 80.55
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
5.35e3
  • 5.35e3
  • 5.62e3
  • 6.20e3
80.51
  • 80.51
  • 79.52
  • 77.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
6.43e3
  • 6.43e3
76.58
  • 76.58
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
6.88e3
  • 6.88e3
74.93
  • 74.93
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
6.90e3
  • 6.90e3
74.87
  • 74.87
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
8.05e3
  • 8.05e3
70.68
  • 70.68
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
9.09e3
  • 9.09e3
66.88
  • 66.88
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
9.35e3
  • 9.35e3
65.95
  • 65.95
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
9.45e3
  • 9.45e3
65.57
  • 65.57
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
9.75e3
  • 9.75e3
64.49
  • 64.49
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.07e4
  • 1.07e4
60.94
  • 60.94
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.08e4
  • 1.08e4
60.66
  • 60.66
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.09e4
  • 1.09e4
60.18
  • 60.18
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.13e4
  • 1.13e4
  • 1.23e4
58.76
  • 58.76
  • 55.03
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.28e4
  • 1.28e4
53.35
  • 53.35
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
49.69
  • 49.69
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000001554.

Cross-references

EnsemblENSRNOG00000001554 (RGD1563888)
RGD1563888 (RGD1563888)
EMBLAABR07033310, AABR07033311, AABR07033312, AABR07033313, CH473989
Uniprot/SPTREMBLD4ACQ8, D4ACQ8_RAT

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