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R. norvegicus Gene: Cdx4 - ENSRNOG00000002974 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000002974
NameCdx4
Descriptioncaudal type homeo box 4 [Source:RGD Symbol;Acc:1561529]
OrganismRattus norvegicus (rat)
Synonym(s)cdx4_predicted, loc302400, rgd1561529
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.41e4
  • 1.41e4
48.58
  • 48.58
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.54e4
  • 1.54e4
43.82
  • 43.82
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.89e4
  • 1.89e4
31.01
  • 31.01
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.93e4
  • 1.93e4
29.54
  • 29.54
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.96e4
  • 1.96e4
28.51
  • 28.51
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
2.02e4
  • 2.02e4
  • 2.16e4
26.47
  • 26.47
  • 21.39
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Glires2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Amniota11 species12 genesCompare expression
Tetrapoda12 species13 genesCompare expression
Euteleostomi13 species14 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000002974.

Cross-references

EnsemblENSRNOG00000002974 (Cdx4)
RGD1561529 (Cdx4)
EMBLAABR07039344, CH473969
Uniprot/SPTREMBLD3ZF67, D3ZF67_RAT

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