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R. norvegicus Gene: Caskin1 - ENSRNOG00000003195 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000003195
NameCaskin1
DescriptionCASK interacting protein 1 [Source:RGD Symbol;Acc:620191]
OrganismRattus norvegicus (rat)
Synonym(s)f1ls31
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.43e3
  • 1.43e3
  • 3.05e3
94.80
  • 94.80
  • 88.89
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.48e3
  • 2.48e3
  • 4.57e3
90.98
  • 90.98
  • 83.34
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
3.68e3
  • 3.68e3
86.59
  • 86.59
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
7.04e3
  • 7.04e3
  • 1.10e4
74.36
  • 74.36
  • 59.96
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
8.26e3
  • 8.26e3
  • 8.53e3
69.93
  • 69.93
  • 68.93
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.21e4
  • 1.21e4
55.93
  • 55.93
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.23e4
  • 1.23e4
55.06
  • 55.06
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.32e4
  • 1.32e4
52.08
  • 52.08
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.36e4
  • 1.36e4
50.36
  • 50.36
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.36e4
  • 1.36e4
50.29
  • 50.29
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
  • 1.45e4
  • 1.51e4
50.00
  • 50.00
  • 47.33
  • 44.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
49.59
  • 49.59
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
49.03
  • 49.03
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.45e4
  • 1.45e4
47.29
  • 47.29
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.46e4
  • 1.46e4
46.97
  • 46.97
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.47e4
  • 1.47e4
46.48
  • 46.48
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.48e4
  • 1.48e4
45.91
  • 45.91
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.50e4
  • 1.50e4
45.43
  • 45.43
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.51e4
  • 1.51e4
44.85
  • 44.85
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.52e4
  • 1.52e4
44.71
  • 44.71
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.53e4
  • 1.53e4
44.18
  • 44.18
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.56e4
  • 1.56e4
43.19
  • 43.19
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Theria11 species11 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000003195.

Cross-references

EnsemblENSRNOG00000003195 (Caskin1)
RGD620191 (Caskin1)
EMBLAC103090
Uniprot/SPTREMBLD3ZE17, D3ZE17_RAT

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