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R. norvegicus Gene: Lrrc59 - ENSRNOG00000003524 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000003524
NameLrrc59
Descriptionleucine rich repeat containing 59 [Source:RGD Symbol;Acc:1305092]
OrganismRattus norvegicus (rat)
Synonym(s)loc287633, mgc105677, q63742, rbp34, rgd1305092
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
895
  • 895
96.74
  • 96.74
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.13e3
  • 1.13e3
95.89
  • 95.89
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.20e3
  • 1.20e3
95.63
  • 95.63
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.21e3
  • 1.21e3
95.60
  • 95.60
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.27e3
  • 1.27e3
95.37
  • 95.37
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.33e3
  • 1.33e3
95.17
  • 95.17
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.33e3
  • 1.33e3
95.14
  • 95.14
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.53e3
  • 1.53e3
  • 1.69e3
  • 1.79e3
94.42
  • 94.42
  • 93.83
  • 93.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.93e3
  • 1.93e3
  • 3.26e3
92.99
  • 92.99
  • 88.13
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
2.35e3
  • 2.35e3
91.43
  • 91.43
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
2.44e3
  • 2.44e3
91.13
  • 91.13
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
2.60e3
  • 2.60e3
90.52
  • 90.52
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.70e3
  • 2.70e3
  • 2.74e3
90.15
  • 90.15
  • 90.02
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
2.89e3
  • 2.89e3
89.49
  • 89.49
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
2.93e3
  • 2.93e3
89.32
  • 89.32
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
2.95e3
  • 2.95e3
89.24
  • 89.24
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
3.06e3
  • 3.06e3
88.87
  • 88.87
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
3.22e3
  • 3.22e3
88.29
  • 88.29
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
3.39e3
  • 3.39e3
87.64
  • 87.64
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
3.98e3
  • 3.98e3
  • 4.03e3
85.50
  • 85.50
  • 85.33
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000003524.

Cross-references

EnsemblENSRNOG00000003524 (Lrrc59)
RGD1305092 (Lrrc59)
EMBLBC086530, D13623
Uniprot/SWISSPROTLRC59_RAT, Q5RJR8

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