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R. norvegicus Gene: Itgb1bp2 - ENSRNOG00000003596 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000003596
NameItgb1bp2
Descriptionintegrin beta 1 binding protein 2 [Source:RGD Symbol;Acc:1565015]
OrganismRattus norvegicus (rat)
Synonym(s)itgb1bp2_predicted, loc317258, rgd1565015
Orthologs(s)16 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
531
  • 531
98.07
  • 98.07
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
719
  • 719
97.38
  • 97.38
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
733
  • 733
97.33
  • 97.33
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
969
  • 969
96.47
  • 96.47
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
8.66e3
  • 8.66e3
68.46
  • 68.46
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
8.72e3
  • 8.72e3
68.25
  • 68.25
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
9.29e3
  • 9.29e3
66.17
  • 66.17
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
9.31e3
  • 9.31e3
66.09
  • 66.09
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
9.78e3
  • 9.78e3
64.39
  • 64.39
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
9.96e3
  • 9.96e3
63.72
  • 63.72
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0034920infant stage
1.17e4
  • 1.17e4
  • 1.18e4
  • 1.62e4
57.54
  • 57.54
  • 57.04
  • 41.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
54.67
  • 54.67
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.25e4
  • 1.25e4
54.51
  • 54.51
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.25e4
  • 1.25e4
54.39
  • 54.39
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.32e4
  • 1.32e4
51.87
  • 51.87
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
49.84
  • 49.84
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.41e4
  • 1.41e4
48.77
  • 48.77
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.52e4
  • 1.52e4
44.59
  • 44.59
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.53e4
  • 1.53e4
  • 1.80e4
44.29
  • 44.29
  • 34.37
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000003596.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta1 geneCompare expression

Paralogy information comes from OMA : ENSRNOG00000003596.

Cross-references

EnsemblENSRNOG00000003596 (Itgb1bp2)
RGD1565015 (Itgb1bp2)
EMBLAABR07039199, CH473966
Uniprot/SPTREMBLD3ZW59, D3ZW59_RAT

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