R. norvegicus Gene: Col1a1 - ENSRNOG00000003897 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000003897
NameCol1a1
Descriptioncollagen, type I, alpha 1 [Source:RGD Symbol;Acc:61817]
OrganismRattus norvegicus (rat)
Synonym(s)a3kna1, colia1, p02455, q63079

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
126
  • 126
99.53168
  • 99.53168
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.19e3
  • 1.19e3
95.57062
  • 95.57062
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.42e3
  • 1.42e3
94.67976
  • 94.67976
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
3.21e3
  • 3.21e3
87.99477
  • 87.99477
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
3.84e3
  • 3.84e3
85.64325
  • 85.64325
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
4.50e3
  • 4.50e3
83.18387
  • 83.18387
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
6.21e3
  • 6.21e3
76.81905
  • 76.81905
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
7.30e3
  • 7.30e3
72.71032
  • 72.71032
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
7.84e3
  • 7.84e3
70.70191
  • 70.70191
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
1.62e4
  • 1.62e4
  • 1.64e4
39.50945
  • 39.50945
  • 38.80496
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Cross-references

EMBLBC133728, CH473948, M11432, Z78279
EnsemblENSRNOG00000003897 (Col1a1)
RGD61817 (Col1a1)
Uniprot/SWISSPROTCO1A1_RAT, P02454

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