R. norvegicus Gene: Col1a1 - ENSRNOG00000003897 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000003897
NameCol1a1
Descriptioncollagen, type I, alpha 1 [Source:RGD Symbol;Acc:61817]
OrganismRattus norvegicus (rat)
Synonym(s)a3kna1, colia1, p02455, q63079

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
126
  • 126
99.54287
  • 99.54287
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
137
  • 137
99.50556
  • 99.50556
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
160
  • 160
99.42021
  • 99.42021
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
442
  • 442
98.39151
  • 98.39151
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
737
  • 737
97.31539
  • 97.31539
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
918
  • 918
96.65686
  • 96.65686
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.06e3
  • 1.06e3
96.13543
  • 96.13543
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.19e3
  • 1.19e3
95.67794
  • 95.67794
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.23e3
  • 1.23e3
95.52949
  • 95.52949
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.37e3
  • 1.37e3
94.99858
  • 94.99858
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.88e3
  • 1.88e3
93.15822
  • 93.15822
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
3.06e3
  • 3.06e3
88.82628
  • 88.82628
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
3.78e3
  • 3.78e3
86.22384
  • 86.22384
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
4.00e3
  • 4.00e3
  • 7.54e3
85.42145
  • 85.42145
  • 72.51767
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
4.50e3
  • 4.50e3
83.60010
  • 83.60010
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
5.07e3
  • 5.07e3
81.51683
  • 81.51683
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
5.68e3
  • 5.68e3
  • 6.71e3
79.27797
  • 79.27797
  • 75.54072
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
8.33e3
  • 8.33e3
  • 9.48e3
69.63213
  • 69.63213
  • 65.42306
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
8.47e3
  • 8.47e3
  • 9.32e3
69.10694
  • 69.10694
  • 66.02159
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
9.97e3
  • 9.97e3
63.65317
  • 63.65317
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
1.58e4
  • 1.58e4
  • 1.62e4
42.21494
  • 42.21494
  • 40.96987
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Cross-references

EMBLBC133728, CH473948, M11432, Z78279
EnsemblENSRNOG00000003897 (Col1a1)
RGD61817 (Col1a1)
Uniprot/SWISSPROTCO1A1_RAT, P02454

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