R. norvegicus Gene: Atp2b1 - ENSRNOG00000004026 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000004026
NameAtp2b1
DescriptionATPase, Ca++ transporting, plasma membrane 1 [Source:RGD Symbol;Acc:621303]
OrganismRattus norvegicus (rat)
Synonym(s)pmca1, pmca1a, pmca1b, pmca1c
Orthologs(s)27 orthologs
Paralog(s)12 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
371
  • 371
  • 399
98.65
  • 98.65
  • 98.55
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
436
  • 436
98.41
  • 98.41
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
677
  • 677
  • 1.08e3
97.54
  • 97.54
  • 96.06
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.83e3
  • 1.83e3
93.32
  • 93.32
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
2.52e3
  • 2.52e3
90.84
  • 90.84
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
2.60e3
  • 2.60e3
90.53
  • 90.53
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
3.31e3
  • 3.31e3
87.96
  • 87.96
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
3.84e3
  • 3.84e3
86.01
  • 86.01
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
4.49e3
  • 4.49e3
83.63
  • 83.63
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
4.54e3
  • 4.54e3
83.46
  • 83.46
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
4.70e3
  • 4.70e3
82.89
  • 82.89
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
4.85e3
  • 4.85e3
82.34
  • 82.34
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
5.33e3
  • 5.33e3
80.60
  • 80.60
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
5.70e3
  • 5.70e3
79.24
  • 79.24
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
5.71e3
  • 5.71e3
79.22
  • 79.22
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0034920infant stage
5.76e3
  • 5.76e3
  • 6.16e3
  • 1.02e4
79.03
  • 79.03
  • 77.58
  • 62.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
6.24e3
  • 6.24e3
77.29
  • 77.29
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
6.79e3
  • 6.79e3
75.25
  • 75.25
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
7.70e3
  • 7.70e3
71.94
  • 71.94
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.20e4
  • 1.20e4
  • 1.22e4
56.43
  • 56.43
  • 55.60
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria26 species27 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000004026.

Paralogs (same species)

Paralogy information comes from OMA : ENSRNOG00000004026.

Cross-references

EnsemblENSRNOG00000004026 (Atp2b1)
RGD621303 (Atp2b1)
EMBLAABR07056786, AABR07056787, AABR07056788, CH473960
Uniprot/SPTREMBLF1LRW6, F1LRW6_RAT
Uniprot/SWISSPROTAT2B1_RAT, P11505

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