R. norvegicus Gene: Atp2b1 - ENSRNOG00000004026 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000004026
NameAtp2b1
DescriptionATPase, Ca++ transporting, plasma membrane 1 [Source:RGD Symbol;Acc:621303]
OrganismRattus norvegicus (rat)
Synonym(s)pmca1, pmca1a, pmca1b, pmca1c

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
370
  • 370
  • 398
98.65270
  • 98.65270
  • 98.55152
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
436
  • 436
98.41190
  • 98.41190
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
677
  • 677
  • 1.08e3
97.53427
  • 97.53427
  • 96.05497
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.83e3
  • 1.83e3
93.31327
  • 93.31327
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
2.52e3
  • 2.52e3
90.82427
  • 90.82427
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
2.60e3
  • 2.60e3
90.52194
  • 90.52194
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
3.31e3
  • 3.31e3
87.94507
  • 87.94507
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
3.84e3
  • 3.84e3
85.99314
  • 85.99314
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
4.49e3
  • 4.49e3
83.60944
  • 83.60944
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
4.54e3
  • 4.54e3
83.43922
  • 83.43922
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
4.70e3
  • 4.70e3
82.86446
  • 82.86446
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
4.85e3
  • 4.85e3
82.31809
  • 82.31809
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
5.33e3
  • 5.33e3
80.57410
  • 80.57410
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
5.65e3
  • 5.65e3
  • 1.02e4
79.40730
  • 79.40730
  • 62.87128
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
5.70e3
  • 5.70e3
79.21746
  • 79.21746
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
5.71e3
  • 5.71e3
79.19492
  • 79.19492
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
6.24e3
  • 6.24e3
77.25823
  • 77.25823
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
6.79e3
  • 6.79e3
75.22172
  • 75.22172
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
7.70e3
  • 7.70e3
71.90451
  • 71.90451
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
  • 1.22e4
57.56188
  • 57.56188
  • 55.55312
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Cross-references

EMBLAABR07056786, AABR07056787, AABR07056788, CH473960
EnsemblENSRNOG00000004026 (Atp2b1)
RGD621303 (Atp2b1)
Uniprot/SPTREMBLF1LRW6, F1LRW6_RAT
Uniprot/SWISSPROTAT2B1_RAT, P11505

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