R. norvegicus Gene: Pkhd1l1 - ENSRNOG00000004398 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000004398
NamePkhd1l1
Descriptionpolycystic kidney and hepatic disease 1-like 1 [Source:RGD Symbol;Acc:1310406]
OrganismRattus norvegicus (rat)
Synonym(s)loc314917, mgc124881
Orthologs(s)16 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.09e4
  • 1.09e4
60.38
  • 60.38
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.11e4
  • 1.11e4
59.63
  • 59.63
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.21e4
  • 1.21e4
55.94
  • 55.94
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.25e4
  • 1.25e4
54.47
  • 54.47
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
1.29e4
  • 1.29e4
  • 1.30e4
  • 1.35e4
52.94
  • 52.94
  • 52.47
  • 50.68
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.33e4
  • 1.33e4
51.49
  • 51.49
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
49.66
  • 49.66
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.39e4
  • 1.39e4
49.23
  • 49.23
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
48.87
  • 48.87
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.41e4
  • 1.41e4
48.49
  • 48.49
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.47e4
  • 1.47e4
46.62
  • 46.62
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.48e4
  • 1.48e4
46.03
  • 46.03
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.52e4
  • 1.52e4
44.67
  • 44.67
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.53e4
  • 1.53e4
  • 1.85e4
44.15
  • 44.15
  • 32.48
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.56e4
  • 1.56e4
43.00
  • 43.00
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.62e4
  • 1.62e4
41.02
  • 41.02
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.68e4
  • 1.68e4
38.63
  • 38.63
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.70e4
  • 1.70e4
  • 1.94e4
38.08
  • 38.08
  • 29.44
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.73e4
  • 1.73e4
37.13
  • 37.13
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.74e4
  • 1.74e4
36.70
  • 36.70
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species16 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000004398.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSRNOG00000004398.

Cross-references

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