R. norvegicus Gene: Tceanc - ENSRNOG00000004531 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000004531
NameTceanc
Descriptiontranscription elongation factor A (SII) N-terminal and central domain containing [Source:RGD Symbol;Acc:1584894]
OrganismRattus norvegicus (rat)
Synonym(s)loc367782
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
8.41e3
  • 8.41e3
69.37
  • 69.37
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
9.48e3
  • 9.48e3
65.46
  • 65.46
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.05e4
  • 1.05e4
61.69
  • 61.69
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.07e4
  • 1.07e4
  • 1.29e4
  • 1.33e4
61.01
  • 61.01
  • 53.07
  • 51.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.14e4
  • 1.14e4
  • 1.41e4
58.43
  • 58.43
  • 48.46
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
56.14
  • 56.14
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.22e4
  • 1.22e4
55.54
  • 55.54
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
54.24
  • 54.24
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
54.16
  • 54.16
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
53.97
  • 53.97
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.28e4
  • 1.28e4
53.30
  • 53.30
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.31e4
  • 1.31e4
52.22
  • 52.22
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.34e4
  • 1.34e4
51.21
  • 51.21
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.34e4
  • 1.34e4
51.03
  • 51.03
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
49.01
  • 49.01
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.44e4
  • 1.44e4
47.41
  • 47.41
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.46e4
  • 1.46e4
  • 1.65e4
46.78
  • 46.78
  • 39.76
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.49e4
  • 1.49e4
45.80
  • 45.80
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.90e4
  • 1.90e4
30.62
  • 30.62
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria10 species11 genesCompare expression
Amniota12 species13 genesCompare expression
Tetrapoda13 species14 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000004531.

Cross-references

EnsemblENSRNOG00000004531 (Tceanc)
RGD1584894 (Tceanc)
EMBLAC130009, CH474014
Uniprot/SPTREMBLD4AEK4, D4AEK4_RAT

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