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R. norvegicus Gene: RGD1306474 - ENSRNOG00000005790 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000005790
NameRGD1306474
Descriptionsimilar to RIKEN cDNA 9530003J23 [Source:RGD Symbol;Acc:1306474]
OrganismRattus norvegicus (rat)
Synonym(s)loc362881, lyzf1, rgd1306474_predictedgn
Orthologs(s)62 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
  • 1.11e4
  • 1.12e4
63.08
  • 63.08
  • 59.47
  • 59.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.63e4
  • 1.63e4
40.79
  • 40.79
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.77e4
  • 1.77e4
35.44
  • 35.44
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.87e4
  • 1.87e4
  • 2.21e4
31.76
  • 31.76
  • 19.54
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
1.96e4
  • 1.96e4
28.76
  • 28.76
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.99e4
  • 1.99e4
27.34
  • 27.34
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
2.01e4
  • 2.01e4
26.82
  • 26.82
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
2.11e4
  • 2.11e4
23.20
  • 23.20
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
2.14e4
  • 2.14e4
22.16
  • 22.16
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
2.23e4
  • 2.23e4
18.91
  • 18.91
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species3 genesCompare expression
Glires3 species5 genesCompare expression
Euarchontoglires7 species9 genesCompare expression
Boreoeutheria11 species13 genesCompare expression
Theria12 species17 genesCompare expression
Mammalia13 species18 genesCompare expression
Tetrapoda14 species19 genesCompare expression
Bilateria20 species62 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000005790.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Muroidea2 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000005790.

Cross-references

EnsemblENSRNOG00000005790 (RGD1306474)
RGD1306474 (RGD1306474)
EMBLAABR07057203, AABR07057204, CH473960, HG931785
Uniprot/SPTREMBLD4A0W2, D4A0W2_RAT

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