R. norvegicus Gene: Slc10a1 - ENSRNOG00000005794 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000005794
NameSlc10a1
Descriptionsolute carrier family 10 (sodium/bile acid cotransporter), member 1 [Source:RGD Symbol;Acc:3681]
OrganismRattus norvegicus (rat)
Synonym(s)ntcp, ntcp1, q5bk99, sbact
Orthologs(s)15 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
238
  • 238
  • 304
  • 411
99.14
  • 99.14
  • 98.89
  • 98.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.21e4
  • 1.21e4
  • 1.47e4
55.88
  • 55.88
  • 46.45
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.27e4
  • 1.27e4
53.72
  • 53.72
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.28e4
  • 1.28e4
53.51
  • 53.51
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.30e4
  • 1.30e4
  • 1.34e4
52.75
  • 52.75
  • 51.31
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
49.67
  • 49.67
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
49.57
  • 49.57
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.44e4
  • 1.44e4
47.43
  • 47.43
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.45e4
  • 1.45e4
47.14
  • 47.14
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.46e4
  • 1.46e4
46.64
  • 46.64
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.48e4
  • 1.48e4
46.23
  • 46.23
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.51e4
  • 1.51e4
45.11
  • 45.11
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.53e4
  • 1.53e4
44.11
  • 44.11
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.55e4
  • 1.55e4
43.41
  • 43.41
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.56e4
  • 1.56e4
43.34
  • 43.34
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.56e4
  • 1.56e4
43.22
  • 43.22
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.56e4
  • 1.56e4
43.14
  • 43.14
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.57e4
  • 1.57e4
42.70
  • 42.70
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.73e4
  • 1.73e4
37.09
  • 37.09
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000005794.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota2 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000005794.

Cross-references

EnsemblENSRNOG00000005794 (Slc10a1)
RGD3681 (Slc10a1)
EMBLBC091152, M77479
Uniprot/SWISSPROTNTCP_RAT, P26435

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