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R. norvegicus Gene: C1d - ENSRNOG00000005982 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000005982
NameC1d
DescriptionC1D nuclear receptor co-repressor [Source:RGD Symbol;Acc:1560600]
OrganismRattus norvegicus (rat)
Synonym(s)loc289810, mgc188504, rgd1560600, rgd1560600_predicted
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
2.44e3
  • 2.44e3
  • 2.60e3
91.11
  • 91.11
  • 90.51
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
3.28e3
  • 3.28e3
88.07
  • 88.07
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
3.66e3
  • 3.66e3
86.69
  • 86.69
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
3.76e3
  • 3.76e3
86.30
  • 86.30
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
3.95e3
  • 3.95e3
  • 8.25e3
85.63
  • 85.63
  • 69.93
AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
4.01e3
  • 4.01e3
85.41
  • 85.41
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
4.17e3
  • 4.17e3
84.80
  • 84.80
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
4.19e3
  • 4.19e3
  • 4.91e3
  • 4.93e3
84.73
  • 84.73
  • 82.12
  • 82.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
4.59e3
  • 4.59e3
83.27
  • 83.27
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
4.63e3
  • 4.63e3
  • 9.29e3
83.15
  • 83.15
  • 66.15
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
4.69e3
  • 4.69e3
82.92
  • 82.92
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
4.70e3
  • 4.70e3
82.89
  • 82.89
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
4.81e3
  • 4.81e3
82.46
  • 82.46
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
4.85e3
  • 4.85e3
82.34
  • 82.34
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
5.09e3
  • 5.09e3
81.47
  • 81.47
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
5.16e3
  • 5.16e3
81.21
  • 81.21
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
5.41e3
  • 5.41e3
80.29
  • 80.29
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
5.43e3
  • 5.43e3
80.23
  • 80.23
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
5.98e3
  • 5.98e3
78.22
  • 78.22
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
6.09e3
  • 6.09e3
77.82
  • 77.82
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
6.57e3
  • 6.57e3
76.08
  • 76.08
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species8 genesCompare expression
Boreoeutheria11 species12 genesCompare expression
Mammalia12 species13 genesCompare expression
Amniota14 species15 genesCompare expression
Tetrapoda15 species16 genesCompare expression
Euteleostomi16 species17 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000005982.

Cross-references

EnsemblENSRNOG00000005982 (C1d)
RGD1560600 (C1d)
EMBLAABR07016428, BC168684, CH473996
Uniprot/SPTREMBLB5DEI6, B5DEI6_RAT

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