R. norvegicus Gene: Txndc16 - ENSRNOG00000006334 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000006334
NameTxndc16
Descriptionthioredoxin domain containing 16 [Source:RGD Symbol;Acc:1306755]
OrganismRattus norvegicus (rat)
Synonym(s)loc361025, rgd1306755
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
4.95e3
  • 4.95e3
81.98
  • 81.98
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
5.28e3
  • 5.28e3
  • 6.71e3
80.76
  • 80.76
  • 75.56
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
5.89e3
  • 5.89e3
78.56
  • 78.56
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
8.07e3
  • 8.07e3
70.60
  • 70.60
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
8.10e3
  • 8.10e3
70.51
  • 70.51
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
9.32e3
  • 9.32e3
66.06
  • 66.06
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
9.45e3
  • 9.45e3
65.58
  • 65.58
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
9.56e3
  • 9.56e3
  • 1.05e4
  • 1.09e4
65.17
  • 65.17
  • 61.83
  • 60.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
9.77e3
  • 9.77e3
64.42
  • 64.42
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
63.16
  • 63.16
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.03e4
  • 1.03e4
62.47
  • 62.47
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.06e4
  • 1.06e4
61.31
  • 61.31
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.11e4
  • 1.11e4
59.45
  • 59.45
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.11e4
  • 1.11e4
59.43
  • 59.43
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
59.13
  • 59.13
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.25e4
  • 1.25e4
54.49
  • 54.49
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.27e4
  • 1.27e4
53.88
  • 53.88
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.27e4
  • 1.27e4
53.75
  • 53.75
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.30e4
  • 1.30e4
  • 2.26e4
52.62
  • 52.62
  • 17.63
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000006334.

Cross-references

EnsemblENSRNOG00000006334 (Txndc16)
RGD1306755 (Txndc16)
EMBLAABR07017252
Uniprot/SPTREMBLD3ZQK4, D3ZQK4_RAT

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