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R. norvegicus Gene: Thy1 - ENSRNOG00000006604 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000006604
NameThy1
DescriptionThy-1 cell surface antigen [Source:RGD Symbol;Acc:3860]
OrganismRattus norvegicus (rat)
Synonym(s)cd7, cd90, thy-1
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
87.1
  • 87.1
  • 3.91e3
99.69
  • 99.69
  • 85.77
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
88.5
  • 88.5
  • 109
99.68
  • 99.68
  • 99.61
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
88.6
  • 88.6
99.68
  • 99.68
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
156
  • 156
99.43
  • 99.43
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
788
  • 788
  • 828
97.13
  • 97.13
  • 96.99
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
2.96e3
  • 2.96e3
89.21
  • 89.21
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
3.19e3
  • 3.19e3
88.38
  • 88.38
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
4.02e3
  • 4.02e3
85.36
  • 85.36
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
4.46e3
  • 4.46e3
83.77
  • 83.77
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
4.72e3
  • 4.72e3
82.81
  • 82.81
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
4.74e3
  • 4.74e3
82.73
  • 82.73
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
5.25e3
  • 5.25e3
80.86
  • 80.86
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
5.38e3
  • 5.38e3
80.42
  • 80.42
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
5.47e3
  • 5.47e3
80.07
  • 80.07
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
6.24e3
  • 6.24e3
77.28
  • 77.28
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
6.47e3
  • 6.47e3
76.44
  • 76.44
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
7.45e3
  • 7.45e3
72.88
  • 72.88
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
7.88e3
  • 7.88e3
71.28
  • 71.28
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.06e4
  • 1.06e4
61.30
  • 61.30
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0034920infant stage
1.39e4
  • 1.39e4
  • 1.62e4
  • 1.79e4
49.46
  • 49.46
  • 41.01
  • 34.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.70e4
  • 1.70e4
  • 2.26e4
38.17
  • 38.17
  • 17.63
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000006604.

Cross-references

EnsemblENSRNOG00000006604 (Thy1)
RGD3860 (Thy1)
EMBLM10666, M18002, X02002, X03150, X03152
Uniprot/SWISSPROTP01830, THY1_RAT

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