R. norvegicus Gene: Cry1 - ENSRNOG00000006622 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000006622
NameCry1
Descriptioncryptochrome circadian clock 1 [Source:RGD Symbol;Acc:735083]
OrganismRattus norvegicus (rat)
Synonym(s)mgc124541, q717b5
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
5.33e3
  • 5.33e3
80.58
  • 80.58
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
5.87e3
  • 5.87e3
78.60
  • 78.60
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
6.06e3
  • 6.06e3
77.91
  • 77.91
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
6.29e3
  • 6.29e3
77.08
  • 77.08
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
6.60e3
  • 6.60e3
75.94
  • 75.94
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
6.70e3
  • 6.70e3
75.58
  • 75.58
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
7.53e3
  • 7.53e3
72.56
  • 72.56
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
7.89e3
  • 7.89e3
71.25
  • 71.25
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0034920infant stage
8.23e3
  • 8.23e3
  • 9.99e3
  • 1.10e4
70.02
  • 70.02
  • 63.63
  • 59.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
8.28e3
  • 8.28e3
69.85
  • 69.85
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
8.38e3
  • 8.38e3
69.46
  • 69.46
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
8.67e3
  • 8.67e3
  • 1.04e4
68.40
  • 68.40
  • 61.95
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
9.23e3
  • 9.23e3
66.39
  • 66.39
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
9.26e3
  • 9.26e3
66.28
  • 66.28
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
9.36e3
  • 9.36e3
65.89
  • 65.89
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
9.70e3
  • 9.70e3
64.67
  • 64.67
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
9.91e3
  • 9.91e3
63.90
  • 63.90
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.05e4
  • 1.05e4
  • 1.09e4
61.83
  • 61.83
  • 60.14
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.13e4
  • 1.13e4
58.89
  • 58.89
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000006622.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa1 geneCompare expression

Paralogy information comes from OMA : ENSRNOG00000006622.

Cross-references

EnsemblENSRNOG00000006622 (Cry1)
RGD735083 (Cry1)
EMBLAF545855, BC107677
Uniprot/SWISSPROTCRY1_RAT, Q32Q86

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